ENSDARG00000078416


Danio rerio

Features
Gene ID: ENSDARG00000078416
  
Biological name :zeb2b
  
Synonyms : zeb2b / zinc finger E-box binding homeobox 2b
  
Possible biological names infered from orthology : O60315 / Q9R0G7 / ZEB2 / zinc finger E-box binding homeobox 2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 840434
Gene end: 957906
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140713
Ensembl peptide - ENSDARP00000149912
Ensembl peptide - ENSDARP00000084452
NCBI entrez gene - 564934     See in Manteia.
RefSeq - NM_001245966
RefSeq Peptide - NP_001232895
swissprot - A0A0R4IWE5
swissprot - F1R6J7
ZFIN ID - ZDB-GENE-080717-1
Ensembl - ENSDARG00000078416
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZEB2ENSGALG00000040465Gallus gallus
 ZEB2ENSG00000169554Homo sapiens
 Zeb2ENSMUSG00000026872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zeb2a / zinc finger E-box binding homeobox 2aENSDARG0000006233862
zeb1b / zinc finger E-box binding homeobox 1b / ZEB1* / Q64318* / P37275* / zinc finger E-box binding homeobox 1*ENSDARG0000001320736
zeb1a / zinc finger E-box binding homeobox 1a / ZEB1* / Q64318* / P37275* / zinc finger E-box binding homeobox 1*ENSDARG0000001678830
BX470259.3 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001115068
CR388132.2 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001040418
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001154567
BX005085.1 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000899477
znf1124 / zinc finger protein 1124 / O75467* / Q6AW86* / ZNF324* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000000697967
zgc:173575 / ZNF324* / O75467* / Q6AW86* / ZNF324B* / zinc finger protein 324* / zinc finger protein 324B*ENSDARG000001168156


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR009057  Homeobox-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001755 neural crest cell migration IMP
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0014029 neural crest formation IMP
 biological_processGO:0035622 intrahepatic bile duct development IMP
 biological_processGO:0060028 convergent extension involved in axis elongation IMP
 biological_processGO:0060030 dorsal convergence IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
brain decreased size , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
Show

 ZFA:0000445 optic tectum optic tectum morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism anterior-posterior axis curved ventral , abnormal
whole organism morphology , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton hypoplastic , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch hypoplastic , abnormal
Show

 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct decreased length , abnormal
intrahepatic bile duct bile ductule decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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