ENSG00000169554


Homo sapiens

Features
Gene ID: ENSG00000169554
  
Biological name :ZEB2
  
Synonyms : O60315 / ZEB2 / zinc finger E-box binding homeobox 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q22.3
Gene start: 144364364
Gene end: 144524583
  
Corresponding Affymetrix probe sets: 203603_s_at (Human Genome U133 Plus 2.0 Array)   228333_at (Human Genome U133 Plus 2.0 Array)   233031_at (Human Genome U133 Plus 2.0 Array)   233033_at (Human Genome U133 Plus 2.0 Array)   235593_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486240
Ensembl peptide - ENSP00000475553
Ensembl peptide - ENSP00000486341
Ensembl peptide - ENSP00000494820
Ensembl peptide - ENSP00000492572
Ensembl peptide - ENSP00000490934
Ensembl peptide - ENSP00000490872
Ensembl peptide - ENSP00000490851
Ensembl peptide - ENSP00000490776
Ensembl peptide - ENSP00000490723
Ensembl peptide - ENSP00000490673
Ensembl peptide - ENSP00000490508
Ensembl peptide - ENSP00000490317
Ensembl peptide - ENSP00000490293
Ensembl peptide - ENSP00000490175
Ensembl peptide - ENSP00000490141
Ensembl peptide - ENSP00000489701
Ensembl peptide - ENSP00000487476
Ensembl peptide - ENSP00000487261
Ensembl peptide - ENSP00000487174
Ensembl peptide - ENSP00000486346
Ensembl peptide - ENSP00000302501
Ensembl peptide - ENSP00000376601
Ensembl peptide - ENSP00000386854
Ensembl peptide - ENSP00000387256
Ensembl peptide - ENSP00000394777
Ensembl peptide - ENSP00000395496
Ensembl peptide - ENSP00000399451
Ensembl peptide - ENSP00000400993
Ensembl peptide - ENSP00000443792
Ensembl peptide - ENSP00000454157
Ensembl peptide - ENSP00000475267
Ensembl peptide - ENSP00000475329
Ensembl peptide - ENSP00000475400
Ensembl peptide - ENSP00000475502
NCBI entrez gene - 9839     See in Manteia.
OMIM - 605802
RefSeq - XM_017005415
RefSeq - NM_001171653
RefSeq - NM_014795
RefSeq - XM_006712881
RefSeq - XM_006712882
RefSeq - XM_011512232
RefSeq - XM_017005414
RefSeq Peptide - NP_001165124
RefSeq Peptide - NP_055610
swissprot - A0A1B0GWI0
swissprot - A0A1B0GWA7
swissprot - A0A1B0GW50
swissprot - A0A1B0GVV8
swissprot - A0A1B0GV02
swissprot - A0A1B0GUM8
swissprot - A0A1B0GTH3
swissprot - A0A0D9SGG5
swissprot - A0A0D9SG93
swissprot - A0A0D9SF74
swissprot - H7C0G0
swissprot - U3KQ51
swissprot - A0A0D9SF71
swissprot - O60315
swissprot - U3KPV5
swissprot - U3KPX6
swissprot - U3KQ33
swissprot - E7EVG9
swissprot - E7EUW9
swissprot - E7ESP8
swissprot - C9JUQ1
swissprot - C9JU62
swissprot - A0A1X7SC99
swissprot - A0JP08
swissprot - A0A1W2PS25
Ensembl - ENSG00000169554
  
Related genetic diseases (OMIM): 235730 - Mowat-Wilson syndrome, 235730

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zeb2bENSDARG00000078416Danio rerio
 ZEB2ENSGALG00000040465Gallus gallus
 Zeb2ENSMUSG00000026872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZEB1 / P37275 / zinc finger E-box binding homeobox 1ENSG0000014851643
Q6AW86 / ZNF324B / zinc finger protein 324BENSG000002494719
O75467 / ZNF324 / zinc finger protein 324ENSG000000838129


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR009057  Homeobox-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR026939  At2g23090-like
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0001755 neural crest cell migration IEA
 biological_processGO:0001756 somitogenesis IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007399 nervous system development NAS
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0021540 corpus callosum morphogenesis IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0021846 cell proliferation in forebrain IEA
 biological_processGO:0021957 corticospinal tract morphogenesis IEA
 biological_processGO:0030177 positive regulation of Wnt signaling pathway IEA
 biological_processGO:0043507 positive regulation of JUN kinase activity IEA
 biological_processGO:0045636 positive regulation of melanocyte differentiation ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0048023 positive regulation of melanin biosynthetic process IC
 biological_processGO:0048066 developmental pigmentation ISS
 biological_processGO:0048598 embryonic morphogenesis IEA
 biological_processGO:0048668 collateral sprouting IEA
 biological_processGO:0050772 positive regulation of axonogenesis IEA
 biological_processGO:0061373 mammillary axonal complex development IEA
 biological_processGO:0097324 melanocyte migration ISS
 biological_processGO:1902748 positive regulation of lens fiber cell differentiation IEA
 biological_processGO:1903056 regulation of melanosome organization ISS
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019208 phosphatase regulator activity NAS
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070412 R-SMAD binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000307 Pointed chin 
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 HP:0000316 Hypertelorism 
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000565 Esotropia 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000692 Misalignment of teeth 
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 HP:0000750 Impaired language development 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0002013 Vomiting 
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 HP:0002019 Constipation 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002307 Drooling 
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 HP:0002558 Supernumerary nipples 
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0003720 Generalized muscle hypertrophy "Hypertrophy (increase in size) of muscle cells in a generalized (not localized) distribution." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0004961 pulmonary artery sling 
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 HP:0005274 Prominent nasal tip 
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 HP:0009748 Fleshy earlobes "Abnormally thickened or fleshy earlobes." [HPO:curators]
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 HP:0009765 Columella, low hanging "Columella extending inferior to the level of the nasal base, when viewed from the side." [pmid:19152422]
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 HP:0009909 Uplifted earlobes "An abnormal orientation of the earlobes such that they point out- and upward." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011229 Broad eyebrow "Regional increase in the width (height) of the eyebrow." [pmid:19125427]
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 HP:0040082 Happy demeanor 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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