ENSDARG00000013539


Danio rerio

Features
Gene ID: ENSDARG00000013539
  
Biological name :ikzf1
  
Synonyms : IKAROS family zinc finger 1 (Ikaros) / ikzf1
  
Possible biological names infered from orthology : IKAROS family zinc finger 1 / Q13422
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 15957508
Gene end: 15994472
  
Corresponding Affymetrix probe sets: Dr.8122.1.S1_a_at (Zebrafish Array)   NM_130986_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000046078
Ensembl peptide - ENSDARP00000151737
Ensembl peptide - ENSDARP00000151091
Ensembl peptide - ENSDARP00000150749
Ensembl peptide - ENSDARP00000074176
Ensembl peptide - ENSDARP00000050480
Ensembl peptide - ENSDARP00000013960
Ensembl peptide - ENSDARP00000042376
NCBI entrez gene - 30177     See in Manteia.
RefSeq - NM_130986
RefSeq Peptide - NP_571061
swissprot - B8A605
swissprot - B8A604
swissprot - B8A603
swissprot - B8A607
swissprot - B8A606
ZFIN ID - ZDB-GENE-980526-304
Ensembl - ENSDARG00000013539
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IKZF1ENSGALG00000013086Gallus gallus
 IKZF1ENSG00000185811Homo sapiens
 Ikzf1ENSMUSG00000018654Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IKZF4 / si:dkey-166n8.9 / Q8C208* / Q9H2S9* / IKAROS family zinc finger 4* / Mus musculus IKAROS family zinc finger 4 (Ikzf4), transcript variant 3, mRNA.*ENSDARG0000003706843
IKZF2 / si:zfos-1425h8.1 / P81183* / Q9UKS7* / IKAROS family zinc finger 2* / Zinc finger protein Helios *ENSDARG0000006911141
ikzf5 / Q6DBW0 / IKAROS family zinc finger 5 / Q8BU00* / Q9H5V7* / Zinc finger protein Pegasus *ENSDARG0000005649116


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030183 B cell differentiation IMP
 biological_processGO:0033077 T cell differentiation in thymus IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001078 thymus thymus lacks parts or has fewer parts of type lymphocyte , abnormal
thymus epithelium morphology , abnormal
thymus has fewer parts of type lymphocyte , abnormal
thymus lacks all parts of type lymphocyte , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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