ENSDARG00000013730


Danio rerio

Features
Gene ID: ENSDARG00000013730
  
Biological name :slc4a4a
  
Synonyms : slc4a4a / solute carrier family 4 (sodium bicarbonate cotransporter), member 4a
  
Possible biological names infered from orthology : O88343 / Q9Y6R1 / SLC4A4 / solute carrier family 4 (anion exchanger), member 4 / solute carrier family 4 member 4
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 45746457
Gene end: 45877387
  
Corresponding Affymetrix probe sets: Dr.13902.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000150925
Ensembl peptide - ENSDARP00000041502
Ensembl peptide - ENSDARP00000105268
Ensembl peptide - ENSDARP00000144892
NCBI entrez gene - 568631     See in Manteia.
swissprot - F1QHT2
swissprot - F1QPJ5
ZFIN ID - ZDB-GENE-060526-274
Ensembl - ENSDARG00000013730
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC4A4ENSGALG00000031105Gallus gallus
 Q9Y6R1ENSG00000080493Homo sapiens
 O88343ENSMUSG00000060961Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc4a4b / solute carrier family 4 (sodium bicarbonate cotransporter), member 4b / Q9Y6R1* / SLC4A4* / O88343* / solute carrier family 4 member 4* / solute carrier family 4 (anion exchanger)...ENSDARG0000004480878
si:ch211-48m9.1 / Q9BY07* / SLC4A5* / solute carrier family 4 member 5*ENSDARG0000000277159
slc4a5 / si:ch211-48m9.1 / solute carrier family 4 (sodium bicarbonate cotransporter), member 5 / Q9BY07* / solute carrier family 4 member 5*ENSDARG0000010438758
slc4a7 / solute carrier family 4, sodium bicarbonate cotransporter, member 7 / Q9Y6M7* / solute carrier family 4 member 7*ENSDARG0000007395251
slc4a10a / solute carrier family 4, sodium bicarbonate transporter, member 10a / Q6U841* / Q5DTL9* / SLC4A10* / solute carrier family 4 member 10* / solute carrier family 4, sodium bicarbon...ENSDARG0000006313350
slc4a8 / solute carrier family 4, sodium bicarbonate cotransporter, member 8 / Q8JZR6* / Q2Y0W8* / solute carrier family 4 member 8* / solute carrier family 4 (anion exchanger), member 8*ENSDARG0000001553149
slc4a10b / solute carrier family 4, sodium bicarbonate transporter, member 10b / Q6U841* / Q5DTL9* / SLC4A10* / solute carrier family 4 member 10* / solute carrier family 4, sodium bicarbon...ENSDARG0000006030343
slc4a2b / solute carrier family 4 (anion exchanger), member 2b / SLC4A2* / P04920* / solute carrier family 4 member 2* / solute carrier family 4 (anion exchanger), member 2*ENSDARG0000005233036
slc4a2a / solute carrier family 4 (anion exchanger), member 2a / SLC4A2* / P04920* / solute carrier family 4 member 2* / solute carrier family 4 (anion exchanger), member 2*ENSDARG0000002817335
slc4a3 / solute carrier family 4 (anion exchanger), member 3 / P48751* / solute carrier family 4 member 3*ENSDARG0000010400529
slc4a1b / solute carrier family 4 (anion exchanger), member 1b (Diego blood group) / P04919* / SLC4A1* / P02730* / solute carrier family 4 (anion exchanger), member 1* / solute carrier fami...ENSDARG0000002456027
slc4a1a / solute carrier family 4 (anion exchanger), member 1a (Diego blood group) / P04919* / SLC4A1* / P02730* / solute carrier family 4 (anion exchanger), member 1* / solute carrier fami...ENSDARG0000001288126
slc4a11 / solute carrier family 4, sodium borate transporter, member 11 / Q8NBS3* / A2AJN7* / solute carrier family 4 member 11* / Sodium bicarbonate transporter-like protein 11 *ENSDARG0000007553219


Protein motifs (from Interpro)
Interpro ID Name
 IPR003020  Bicarbonate transporter, eukaryotic
 IPR003024  Sodium bicarbonate cotransporter
 IPR011531  Bicarbonate transporter, C-terminal
 IPR013769  Band 3 cytoplasmic domain
 IPR016152  Phosphotransferase/anion transporter


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006820 anion transport IEA
 biological_processGO:0015698 inorganic anion transport IEA
 biological_processGO:0015701 bicarbonate transport IEA
 biological_processGO:0051453 regulation of intracellular pH IBA
 biological_processGO:0098656 anion transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005452 inorganic anion exchanger activity IEA
 molecular_functionGO:0008509 anion transmembrane transporter activity IEA
 molecular_functionGO:0008510 sodium:bicarbonate symporter activity IDA


Pathways (from Reactome)
Pathway description
Bicarbonate transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000152 retina retina distended , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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