ENSDARG00000015610


Danio rerio

Features
Gene ID: ENSDARG00000015610
  
Biological name :tubg1
  
Synonyms : tubg1 / tubulin, gamma 1
  
Possible biological names infered from orthology : P23258 / P83887 / Q8VCK3 / Q9NRH3 / TUBG2 / tubulin gamma 2
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 37059803
Gene end: 37082618
  
Corresponding Affymetrix probe sets: Dr.11201.1.S1_at (Zebrafish Array)   NM_200908_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000101618
Ensembl peptide - ENSDARP00000016775
NCBI entrez gene - 393882     See in Manteia.
RefSeq - NM_200908
RefSeq - NM_001320515
RefSeq Peptide - NP_001307444
RefSeq Peptide - NP_957202
swissprot - B0JZL0
swissprot - Q7ZVM5
ZFIN ID - ZDB-GENE-040426-836
Ensembl - ENSDARG00000015610
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000030003Gallus gallus
 TUBG1ENSG00000131462Homo sapiens
 TUBG2ENSG00000037042Homo sapiens
 Tubg1ENSMUSG00000035198Mus musculus
 Tubg2ENSMUSG00000045007Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002454  Gamma tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007017 microtubule-based process IEA
 biological_processGO:0007020 microtubule nucleation IEA
 biological_processGO:0031122 cytoplasmic microtubule organization IEA
 cellular_componentGO:0000930 gamma-tubulin complex IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver increased size , abnormal
liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk curved dorsal , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0009111 hepatocyte hepatocyte increased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000029133 tubgcp3 / tubulin, gamma complex associated protein 3 / P58854* / Q96CW5*  / complex
 ENSDARG00000015610 tubg1 / tubulin, gamma 1 / TUBG2* / Q9NRH3* / P23258* / P83887* / Q8VCK3* / tubulin gamma 2*  / complex






 

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