ENSDARG00000015851


Danio rerio

Features
Gene ID: ENSDARG00000015851
  
Biological name :pnn
  
Synonyms : pinin, desmosome associated protein / pnn
  
Possible biological names infered from orthology : pinin / Q9H307
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 13099476
Gene end: 13110121
  
Corresponding Affymetrix probe sets: Dr.4816.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000011002
NCBI entrez gene - 407733     See in Manteia.
RefSeq - NM_001172570
RefSeq Peptide - NP_001166041
swissprot - F1QT45
ZFIN ID - ZDB-GENE-060519-3
Ensembl - ENSDARG00000015851
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PNNENSGALG00000010167Gallus gallus
 PNNENSG00000100941Homo sapiens
 PnnENSMUSG00000020994Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006786  Pinin/SDK/MemA protein
 IPR006787  Pinin/SDK


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0014033 neural crest cell differentiation IMP
 cellular_componentGO:0005911 cell-cell junction IBA
 cellular_componentGO:0035145 exon-exon junction complex IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta structure , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000056 pharynx pharynx lacks parts or has fewer parts of type pharyngeal arch 3-7 , abnormal
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 ZFA:0000076 swim bladder swim bladder aplastic , abnormal
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 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage decreased size , abnormal
pharyngeal arch cartilage malformed , abnormal
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 ZFA:0001463 melanophore stripe melanophore stripe decreased thickness , abnormal
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 ZFA:0005024 trunk vasculature trunk vasculature increased branchiness , abnormal
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 ZFA:0009090 pigment cell pigment cell spatial pattern , abnormal
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 ZFA:0009165 neural crest cell neural crest cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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