ENSDARG00000016855


Danio rerio

Features
Gene ID: ENSDARG00000016855
  
Biological name :sf3b5
  
Synonyms : sf3b5 / splicing factor 3b, subunit 5
  
Possible biological names infered from orthology : Q923D4 / Q9BWJ5
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 23897975
Gene end: 23901732
  
Corresponding Affymetrix probe sets: Dr.15894.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000016634
NCBI entrez gene - 436751     See in Manteia.
swissprot - Q6ZM78
ZFIN ID - ZDB-GENE-040718-181
Ensembl - ENSDARG00000016855
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF3B5ENSGALG00000030824Gallus gallus
 SF3B5ENSG00000169976Homo sapiens
 Sf3b5ENSMUSG00000078348Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009846  Splicing factor 3B subunit 5/RDS3 complex subunit 10
 IPR017089  Splicing factor 3B, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk quality , abnormal
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 ZFA:0000106 extension extension absent , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism necrotic , abnormal
whole organism shape , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased size , abnormal
trunk atrophied , abnormal
trunk curved , abnormal
trunk decreased thickness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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