ENSGALG00000030824


Gallus gallus

Features
Gene ID: ENSGALG00000030824
  
Biological name :SF3B5
  
Synonyms : SF3B5 / splicing factor 3b subunit 5
  
Possible biological names infered from orthology : Q923D4 / Q9BWJ5
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 46010325
Gene end: 46011254
  
Corresponding Affymetrix probe sets: Gga.6981.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048790
NCBI entrez gene - 769794     See in Manteia.
RefSeq - NM_001302090
RefSeq - NM_001302091
RefSeq Peptide - NP_001289020
RefSeq Peptide - NP_001289019
swissprot - A0A1D5P7U7
Ensembl - ENSGALG00000030824
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b5ENSDARG00000016855Danio rerio
 SF3B5ENSG00000169976Homo sapiens
 Sf3b5ENSMUSG00000078348Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009846  Splicing factor 3B subunit 5/RDS3 complex subunit 10
 IPR017089  Splicing factor 3B, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr