ENSMUSG00000078348


Mus musculus

Features
Gene ID: ENSMUSG00000078348
  
Biological name :Sf3b5
  
Synonyms : Q923D4 / Sf3b5 / Splicing factor 3B subunit 5
  
Possible biological names infered from orthology : Q9BWJ5
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: A2
Gene start: 13005343
Gene end: 13009183
  
Corresponding Affymetrix probe sets: 10361767 (MoGene1.0st)   1437972_s_at (Mouse Genome 430 2.0 Array)   1439370_x_at (Mouse Genome 430 2.0 Array)   1451185_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000100771
NCBI entrez gene - 66125     See in Manteia.
MGI - MGI:1913375
RefSeq - NM_175102
RefSeq Peptide - NP_780311
swissprot - Q923D4
Ensembl - ENSMUSG00000078348
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b5ENSDARG00000016855Danio rerio
 SF3B5ENSGALG00000030824Gallus gallus
 SF3B5ENSG00000169976Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009846  Splicing factor 3B subunit 5/RDS3 complex subunit 10
 IPR017089  Splicing factor 3B, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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