ENSDARG00000016864


Danio rerio

Features
Gene ID: ENSDARG00000016864
  
Biological name :farsb
  
Synonyms : farsb / phenylalanyl-tRNA synthetase, beta subunit
  
Possible biological names infered from orthology : Phenylalanine--tRNA ligase beta subunit / Q9NSD9 / Q9WUA2
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 42264891
Gene end: 42283830
  
Corresponding Affymetrix probe sets: Dr.218.1.A1_at (Zebrafish Array)   NM_001007768_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000007817
NCBI entrez gene - 493608     See in Manteia.
RefSeq - NM_001007768
RefSeq Peptide - NP_001007769
swissprot - F1Q820
ZFIN ID - ZDB-GENE-021206-2
Ensembl - ENSDARG00000016864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FARSBENSGALG00000005236Gallus gallus
 FARSBENSG00000116120Homo sapiens
 FarsbENSMUSG00000026245Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrrc47 / leucine rich repeat containing 47 / Q505F5* / Q8N1G4* / Leucine-rich repeat-containing protein 47 *ENSDARG0000005313815


Protein motifs (from Interpro)
Interpro ID Name
 IPR004531  Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic
 IPR005146  B3/B4 tRNA-binding domain
 IPR005147  tRNA synthetase, B5-domain
 IPR009061  Putative DNA-binding domain superfamily
 IPR020825  Phenylalanyl-tRNA synthetase, B3/B4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006432 phenylalanyl-tRNA aminoacylation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0009328 phenylalanine-tRNA ligase complex IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004826 phenylalanine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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