ENSDARG00000017038


Danio rerio

Features
Gene ID: ENSDARG00000017038
  
Biological name :zgc:152670
  
Synonyms : zgc:152670
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 44348473
Gene end: 44362943
  
Corresponding Affymetrix probe sets: Dr.24687.1.A1_at (Zebrafish Array)   NM_001076655_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000088918
Ensembl peptide - ENSDARP00000128836
NCBI entrez gene - 557059     See in Manteia.
RefSeq - NM_001076655
RefSeq Peptide - NP_001070123
swissprot - X1WF32
swissprot - Z4YHZ5
ZFIN ID - ZDB-GENE-060929-954
Ensembl - ENSDARG00000017038
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
p4ha2 / procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2 / O15460* / prolyl 4-hydroxylase subunit alpha 2*ENSDARG0000001008538
p4ha1b / prolyl 4-hydroxylase, alpha polypeptide I b / P4HA1* / P13674* / Q60715* / prolyl 4-hydroxylase subunit alpha 1*ENSDARG0000007108238
p4ha1a / prolyl 4-hydroxylase, alpha polypeptide I a / P4HA1* / P13674* / Q60715* / prolyl 4-hydroxylase subunit alpha 1*ENSDARG0000003353737
si:ch73-68b22.2ENSDARG0000009460935
p4ha3 / prolyl 4-hydroxylase, alpha polypeptide III / Q7Z4N8* / prolyl 4-hydroxylase subunit alpha 3*ENSDARG0000010369233
si:cabz01069582.1 / P4HA3* / Q7Z4N8* / prolyl 4-hydroxylase subunit alpha 3*ENSDARG0000010534911


Protein motifs (from Interpro)
Interpro ID Name
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR006620  Prolyl 4-hydroxylase, alpha subunit
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013547  Prolyl 4-hydroxylase alpha-subunit, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0019511 peptidyl-proline hydroxylation IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 molecular_functionGO:0004656 procollagen-proline 4-dioxygenase activity IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0031418 L-ascorbic acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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