ENSDARG00000017522


Danio rerio

Features
Gene ID: ENSDARG00000017522
  
Biological name :ctdp1
  
Synonyms : CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 / ctdp1
  
Possible biological names infered from orthology : CTD phosphatase subunit 1 / Q7TSG2 / Q9Y5B0 / RNA polymerase II subunit A C-terminal domain phosphatase
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 11632834
Gene end: 11846958
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000123927
NCBI entrez gene - 442930     See in Manteia.
RefSeq - NM_001002873
RefSeq Peptide - NP_001002873
swissprot - E7FFL3
ZFIN ID - ZDB-GENE-040720-1
Ensembl - ENSDARG00000017522
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTDP1ENSGALG00000031461Gallus gallus
 CTDP1ENSG00000060069Homo sapiens
 Ctdp1ENSMUSG00000033323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR004274  FCP1 homology domain
 IPR011053  Single hybrid motif
 IPR011947  FCP1-like phosphatase, phosphatase domain
 IPR015388  FCP1-like phosphatase, C-terminal
 IPR023214  HAD superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016591 DNA-directed RNA polymerase II, holoenzyme IBA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0008420 CTD phosphatase activity IBA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head decreased width , abnormal
head pointed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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