ENSGALG00000031461


Gallus gallus

Features
Gene ID: ENSGALG00000031461
  
Biological name :CTDP1
  
Synonyms : CTDP1 / CTD phosphatase subunit 1
  
Possible biological names infered from orthology : Q7TSG2 / Q9Y5B0 / RNA polymerase II subunit A C-terminal domain phosphatase
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 56552221
Gene end: 56652315
  
Corresponding Affymetrix probe sets: Gga.14510.1.S1_s_at (Chicken Array)   Gga.17272.1.S1_at (Chicken Array)   GgaAffx.23955.1.S1_at (Chicken Array)   GgaAffx.23955.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051232
NCBI entrez gene - 420813     See in Manteia.
RefSeq - XM_015275935
RefSeq - XM_418905
swissprot - A0A1D5PEM7
Ensembl - ENSGALG00000031461
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ctdp1ENSDARG00000017522Danio rerio
 CTDP1ENSG00000060069Homo sapiens
 Ctdp1ENSMUSG00000033323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR004274  FCP1 homology domain
 IPR011947  FCP1-like phosphatase, phosphatase domain
 IPR015388  FCP1-like phosphatase, C-terminal
 IPR023214  HAD superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0010458 exit from mitosis IEA
 biological_processGO:0043923 positive regulation by host of viral transcription IEA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0051233 spindle midzone IEA
 molecular_functionGO:0001096 TFIIF-class transcription factor binding IEA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0008420 CTD phosphatase activity IEA
 molecular_functionGO:0030957 Tat protein binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000000944 SUPT4H1 / SPT4 homolog, DSIF elongation factor subunit / P63272* / Supt4a* / P63271* / suppressor of Ty 4A*  / complex / reaction
 ENSGALG00000008532 NELFB / negative elongation factor complex member B / Q8WX92* / negative elongation factor B isoform 1 *  / complex
 ENSGALG00000039160 Q5ZI08 / SUPT5H / Transcription elongation factor SPT5 / Supt5* / O55201* / O00267* / SPT5 homolog, DSIF elongation factor subunit*  / reaction / complex
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / reaction
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / complex / reaction
 ENSGALG00000006843 NCBP2 / A6PVI3* / NCBP2L* / P52298* / Q9CQ49* / nuclear cap binding protein subunit 2* / nuclear cap binding protein subunit 2 like*  / reaction / complex






 

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