ENSGALG00000016974


Gallus gallus

Features
Gene ID: ENSGALG00000016974
  
Biological name :GTF2F2
  
Synonyms : general transcription factor IIF subunit 2 / GTF2F2
  
Possible biological names infered from orthology : P13984 / Q8R0A0 / ral transcription factor IIF subunit 2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 167654675
Gene end: 167744981
  
Corresponding Affymetrix probe sets: Gga.9598.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027374
NCBI entrez gene - 418843     See in Manteia.
RefSeq - XM_417039
swissprot - E1BXD0
Ensembl - ENSGALG00000016974
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2f2aENSDARG00000069910Danio rerio
 gtf2f2bENSDARG00000006816Danio rerio
 GTF2F2ENSG00000188342Homo sapiens
 Gtf2f2ENSMUSG00000067995Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003196  Transcription initiation factor IIF, beta subunit
 IPR011039  Transcription Factor IIF, Rap30/Rap74, interaction
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IBA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005674 transcription factor TFIIF complex IBA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0097550 transcriptional preinitiation complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000991 transcription factor activity, core RNA polymerase II binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001962 PTBP1 / polypyrimidine tract-binding protein 1 / P26599*  / reaction / complex
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / complex / reaction
 ENSGALG00000003793 GTF2A2 / general transcription factor IIA subunit 2 / P52657* / Q80ZM7* / Transcription initiation factor IIA subunit 2 *  / complex / reaction
 ENSGALG00000006205 GTF2B / general transcription factor IIB / P62915* / Q00403* / Transcription initiation factor IIB *  / complex / reaction
 ENSGALG00000006843 NCBP2 / A6PVI3* / NCBP2L* / P52298* / Q9CQ49* / nuclear cap binding protein subunit 2* / nuclear cap binding protein subunit 2 like*  / complex / reaction
 ENSGALG00000015787 RNGTT / RNA guanylyltransferase and 5-phosphatase / O55236* / O60942*  / reaction / complex
 ENSGALG00000013889 RNMT / RNA guanine-7 methyltransferase / O43148* / Q9D0L8*  / reaction
 ENSGALG00000012000 Q5ZK35 / METTL14 / N6-adenosine-methyltransferase non-catalytic subunit / Q3UIK4* / Q9HCE5* / methyltransferase like 14*  / reaction
 ENSGALG00000010576 GTF2A1 / general transcription factor IIA subunit 1 / P52655* / Q99PM3* / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiat...  / reaction / complex
 ENSGALG00000011660 WTAP / WT1 associated protein / Q15007* / Q9ER69* / Wilms tumour 1-associating protein*  / reaction
 ENSGALG00000042011 HNRNPA1 / Gallus gallus heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), mRNA. / Q32P51* / P49312* / P09651* / HNRNPA1L2* / HNRNPA1P48* / heterogeneous nuclear ribonucleoprotein A1* / ...  / complex / reaction
 ENSGALG00000039160 Q5ZI08 / SUPT5H / Transcription elongation factor SPT5 / Supt5* / O55201* / O00267* / SPT5 homolog, DSIF elongation factor subunit*  / reaction
 ENSGALG00000031461 CTDP1 / CTD phosphatase subunit 1 / Q7TSG2* / Q9Y5B0* / RNA polymerase II subunit A C-terminal domain phosphatase *  / reaction
 ENSGALG00000035576 CDK9 / Q5ZKN1 / Cyclin-dependent kinase 9 / P50750* / Q99J95*  / complex
 ENSGALG00000042320 GTF2E1 / general transcription factor IIE subunit 1 / P29083* / Q9D0D5* / Mus musculusral transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), transcript variant 2, mRNA.*  / reaction / complex






 

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