ENSGALG00000003793


Gallus gallus

Features
Gene ID: ENSGALG00000003793
  
Biological name :GTF2A2
  
Synonyms : general transcription factor IIA subunit 2 / GTF2A2
  
Possible biological names infered from orthology : P52657 / Q80ZM7 / Transcription initiation factor IIA subunit 2
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 5330896
Gene end: 5335922
  
Corresponding Affymetrix probe sets: Gga.5355.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058830
Ensembl peptide - ENSGALP00000006007
NCBI entrez gene - 770910     See in Manteia.
RefSeq - XM_015278899
RefSeq - NM_001081708
RefSeq Peptide - NP_001075177
swissprot - A1IIE5
Ensembl - ENSGALG00000003793
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2a2ENSDARG00000053685Danio rerio
 GTF2A2ENSG00000140307Homo sapiens
 Gtf2a2ENSMUSG00000033543Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003194  Transcription initiation factor IIA, gamma subunit
 IPR009083  Transcription factor IIA, helical
 IPR009088  Transcription factor IIA, beta-barrel
 IPR015871  Transcription initiation factor IIA, gamma subunit, C-terminal
 IPR015872  Transcription initiation factor IIA, gamma subunit, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005672 transcription factor TFIIA complex IBA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0017025 TBP-class protein binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000010576 GTF2A1 / general transcription factor IIA subunit 1 / P52655* / Q99PM3* / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiat...  / complex
 ENSGALG00000011171 TBP / TATA-box-binding protein / P20226* / P29037*  / complex / reaction
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / complex / reaction
 ENSGALG00000004570 NCOA3 / nuclear receptor coactivator 3 / Q9Y6Q9*  / reaction / complex
 ENSGALG00000006205 GTF2B / general transcription factor IIB / P62915* / Q00403* / Transcription initiation factor IIB *  / complex / reaction
 ENSGALG00000016617 NCOA1 / nuclear receptor coactivator 1 / P70365* / Q15788*  / complex / reaction
 ENSGALG00000011992 EP300 / E1A binding protein p300 / B2RWS6* / Q09472* / Histone acetyltransferase p300 *  / reaction / complex
 ENSGALG00000029270 GATA3 / P23825 / GATA-binding factor 3 / P23771* / P23772* / GATA binding protein 3* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*  / complex / reaction
 ENSGALG00000042320 GTF2E1 / general transcription factor IIE subunit 1 / P29083* / Q9D0D5* / Mus musculusral transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), transcript variant 2, mRNA.*  / reaction / complex
 ENSGALG00000032713 FOXA1 / forkhead box A1 / P35582* / P55317* / Hepatocyte nuclear factor 3-alpha *  / complex / reaction






 

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