ENSDARG00000053685


Danio rerio

Features
Gene ID: ENSDARG00000053685
  
Biological name :gtf2a2
  
Synonyms : general transcription factor IIA, 2 / gtf2a2
  
Possible biological names infered from orthology : general transcription factor IIA subunit 2 / P52657 / Q80ZM7 / Transcription initiation factor IIA subunit 2
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 29351499
Gene end: 29356084
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000070238
NCBI entrez gene - 798997     See in Manteia.
RefSeq - NM_001020605
RefSeq Peptide - NP_001018441
swissprot - Q503H9
ZFIN ID - ZDB-GENE-050522-513
Ensembl - ENSDARG00000053685
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2A2ENSGALG00000003793Gallus gallus
 GTF2A2ENSG00000140307Homo sapiens
 Gtf2a2ENSMUSG00000033543Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003194  Transcription initiation factor IIA, gamma subunit
 IPR009083  Transcription factor IIA, helical
 IPR009088  Transcription factor IIA, beta-barrel
 IPR015871  Transcription initiation factor IIA, gamma subunit, C-terminal
 IPR015872  Transcription initiation factor IIA, gamma subunit, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005672 transcription factor TFIIA complex IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0017025 TBP-class protein binding IBA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000000542 gtf2e1 / general transcription factor IIE, polypeptide 1, alpha / P29083* / Q9D0D5* / general transcription factor IIE subunit 1* / Mus musculusral transcription factor II E, polypeptide 1 ...  / reaction / complex
 ENSDARG00000018698 carm1 / Q6DC04 / coactivator-associated arginine methyltransferase 1 / Q9WVG6* / Q86X55* / Histone-arginine methyltransferase CARM1 *  / reaction / complex
 ENSDARG00000012672 gtf2e2 / general transcription factor IIE, polypeptide 2, beta / P29084* / Q9D902* / ral transcription factor IIE subunit 2 * / general transcription factor IIE subunit 2*  / reaction / complex
 ENSDARG00000014994 tbp / Q7SXL3 / TATA box binding protein / P20226* / P29037*  / reaction / complex
 ENSDARG00000004111 esr1 / estrogen receptor 1 / P03372* / P19785* / Estrogen receptor *  / complex / reaction
 ENSDARG00000077404 ncoa3 / nuclear receptor coactivator 3 / Q9Y6Q9*  / complex / reaction
 ENSDARG00000018257 ncoa1 / nuclear receptor coactivator 1 / P70365* / Q15788*  / complex / reaction
 ENSDARG00000006816 gtf2f2b / general transcription factor IIF, polypeptide 2b / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / reaction / complex
 ENSDARG00000010246 prmt1 / protein arginine methyltransferase 1 / Q99873* / Q9JIF0* / protein arginine N-methyltransferase 1*  / reaction / complex
 ENSDARG00000069910 gtf2f2a / general transcription factor IIF, polypeptide 2a / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / reaction / complex
 ENSDARG00000016526 gata3 / Q91428 / GATA binding protein 3 / P23771* / P23772* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*  / complex / reaction






 

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