ENSDARG00000012672


Danio rerio

Features
Gene ID: ENSDARG00000012672
  
Biological name :gtf2e2
  
Synonyms : general transcription factor IIE, polypeptide 2, beta / gtf2e2
  
Possible biological names infered from orthology : general transcription factor IIE subunit 2 / P29084 / Q9D902 / ral transcription factor IIE subunit 2
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 22851261
Gene end: 22876174
  
Corresponding Affymetrix probe sets: Dr.51.1.S1_at (Zebrafish Array)   NM_212731_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136051
Ensembl peptide - ENSDARP00000144651
Ensembl peptide - ENSDARP00000020885
NCBI entrez gene - 334854     See in Manteia.
RefSeq - NM_212731
RefSeq Peptide - NP_997896
swissprot - A0A0R4IMK5
swissprot - Q6NXA3
ZFIN ID - ZDB-GENE-030131-6794
Ensembl - ENSDARG00000012672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2E2ENSGALG00000010283Gallus gallus
 GTF2E2ENSG00000197265Homo sapiens
 Gtf2e2ENSMUSG00000031585Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003166  Transcription factor TFIIE beta subunit, DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR016656  Transcription initiation factor TFIIE, beta subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005673 transcription factor TFIIE complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000000542 gtf2e1 / general transcription factor IIE, polypeptide 1, alpha / P29083* / Q9D0D5* / general transcription factor IIE subunit 1* / Mus musculusral transcription factor II E, polypeptide 1 ...  / complex
 ENSDARG00000053685 gtf2a2 / general transcription factor IIA, 2 / P52657* / Q80ZM7* / general transcription factor IIA subunit 2* / Transcription initiation factor IIA subunit 2 *  / complex / reaction
 ENSDARG00000069910 gtf2f2a / general transcription factor IIF, polypeptide 2a / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / complex / reaction
 ENSDARG00000006816 gtf2f2b / general transcription factor IIF, polypeptide 2b / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / complex / reaction






 

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