ENSG00000197265


Homo sapiens

Features
Gene ID: ENSG00000197265
  
Biological name :GTF2E2
  
Synonyms : general transcription factor IIE subunit 2 / GTF2E2 / P29084
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: p12
Gene start: 30578318
Gene end: 30658251
  
Corresponding Affymetrix probe sets: 202680_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000348168
Ensembl peptide - ENSP00000429921
Ensembl peptide - ENSP00000429312
Ensembl peptide - ENSP00000428981
NCBI entrez gene - 2961     See in Manteia.
OMIM - 189964
RefSeq - XM_011544509
RefSeq - XM_011544510
RefSeq - XM_017013363
RefSeq - XM_017013364
RefSeq - NM_002095
RefSeq Peptide - NP_002086
swissprot - P29084
swissprot - E5RIW4
swissprot - E5RH41
swissprot - E5RK24
Ensembl - ENSG00000197265
  
Related genetic diseases (OMIM): 616943 - Trichothiodystrophy 6, nonphotosensitive, 616943
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2e2ENSDARG00000012672Danio rerio
 GTF2E2ENSGALG00000010283Gallus gallus
 Gtf2e2ENSMUSG00000031585Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003166  Transcription factor TFIIE beta subunit, DNA-binding domain
 IPR016656  Transcription initiation factor TFIIE, beta subunit
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter TAS
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005669 transcription factor TFIID complex IDA
 cellular_componentGO:0005673 transcription factor TFIIE complex IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
HIV Transcription Initiation
RNA Polymerase II HIV Promoter Escape
Transcription of the HIV genome
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000565 Esotropia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0001270 Motor retardation 
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 HP:0001518 Low birth weight 
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 HP:0001761 Pes cavus 
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002217 Slow-growing hair 
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 HP:0002299 Fine, brittle hair 
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002423 Long-tract signs 
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004440 Coronal craniosynostosis 
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 HP:0008619 Hearing loss, sensorineural, bilateral 
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 HP:0008883 Mild intrauterine growth retardation 
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 HP:0045055 Tiger tail banding "A diagnostic alternating light and dark banding pattern under polarizing microscopy." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000165417 GTF2A1 / P52655 / general transcription factor IIA subunit 1  / complex / reaction
 ENSG00000163161 ERCC3 / P19447 / ERCC excision repair 3, TFIIH core complex helicase subunit  / reaction
 ENSG00000140307 GTF2A2 / P52657 / general transcription factor IIA subunit 2  / complex / reaction
 ENSG00000153767 GTF2E1 / P29083 / general transcription factor IIE subunit 1  / complex
 ENSG00000188342 GTF2F2 / P13984 / general transcription factor IIF subunit 2  / complex / reaction
 ENSG00000125651 GTF2F1 / P35269 / general transcription factor IIF subunit 1  / complex / reaction
 ENSG00000137947 GTF2B / Q00403 / general transcription factor IIB  / reaction / complex






 

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