ENSGALG00000010576


Gallus gallus

Features
Gene ID: ENSGALG00000010576
  
Biological name :GTF2A1
  
Synonyms : general transcription factor IIA subunit 1 / GTF2A1
  
Possible biological names infered from orthology : P52655 / Q99PM3 / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiation factor IIA beta chain
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 40868271
Gene end: 40894704
  
Corresponding Affymetrix probe sets: Gga.5366.1.S1_at (Chicken Array)   GgaAffx.21558.1.S1_s_at (Chicken Array)   GgaAffx.6685.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017191
NCBI entrez gene - 423389     See in Manteia.
RefSeq - NM_001031207
RefSeq Peptide - NP_001026378
swissprot - A1IIE6
Ensembl - ENSGALG00000010576
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2a1ENSDARG00000011000Danio rerio
 GTF2A1ENSG00000165417Homo sapiens
 Gtf2a1ENSMUSG00000020962Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GTF2A1L / Q8R4I4* / TFIIA-alpha and beta-like factor *ENSGALG0000002674737


Protein motifs (from Interpro)
Interpro ID Name
 IPR004855  Transcription factor IIA, alpha/beta subunit
 IPR009083  Transcription factor IIA, helical
 IPR009088  Transcription factor IIA, beta-barrel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005672 transcription factor TFIIA complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003793 GTF2A2 / general transcription factor IIA subunit 2 / P52657* / Q80ZM7* / Transcription initiation factor IIA subunit 2 *  / complex
 ENSGALG00000004570 NCOA3 / nuclear receptor coactivator 3 / Q9Y6Q9*  / reaction / complex
 ENSGALG00000006205 GTF2B / general transcription factor IIB / P62915* / Q00403* / Transcription initiation factor IIB *  / reaction / complex
 ENSGALG00000016617 NCOA1 / nuclear receptor coactivator 1 / P70365* / Q15788*  / reaction / complex
 ENSGALG00000011171 TBP / TATA-box-binding protein / P20226* / P29037*  / reaction / complex
 ENSGALG00000010576 GTF2A1 / general transcription factor IIA subunit 1 / P52655* / Q99PM3* / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiat...  / complex
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / reaction / complex
 ENSGALG00000011992 EP300 / E1A binding protein p300 / B2RWS6* / Q09472* / Histone acetyltransferase p300 *  / complex / reaction
 ENSGALG00000029270 GATA3 / P23825 / GATA-binding factor 3 / P23771* / P23772* / GATA binding protein 3* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*  / reaction / complex
 ENSGALG00000042320 GTF2E1 / general transcription factor IIE subunit 1 / P29083* / Q9D0D5* / Mus musculusral transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), transcript variant 2, mRNA.*  / reaction / complex
 ENSGALG00000032713 FOXA1 / forkhead box A1 / P35582* / P55317* / Hepatocyte nuclear factor 3-alpha *  / complex / reaction






 

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