ENSDARG00000011000


Danio rerio

Features
Gene ID: ENSDARG00000011000
  
Biological name :gtf2a1
  
Synonyms : general transcription factor IIA, 1 / gtf2a1
  
Possible biological names infered from orthology : general transcription factor IIA subunit 1 / P52655 / Q99PM3 / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiation factor IIA beta chain
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 16437741
Gene end: 16453603
  
Corresponding Affymetrix probe sets: Dr.24669.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000015974
NCBI entrez gene - 323974     See in Manteia.
RefSeq - NM_212657
RefSeq Peptide - NP_997822
swissprot - Q5TYT6
ZFIN ID - ZDB-GENE-030131-2694
Ensembl - ENSDARG00000011000
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2A1ENSGALG00000010576Gallus gallus
 GTF2A1ENSG00000165417Homo sapiens
 Gtf2a1ENSMUSG00000020962Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gtf2a1l / general transcription factor IIA, 1-likeENSDARG0000006367035


Protein motifs (from Interpro)
Interpro ID Name
 IPR004855  Transcription factor IIA, alpha/beta subunit
 IPR009083  Transcription factor IIA, helical
 IPR009088  Transcription factor IIA, beta-barrel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005672 transcription factor TFIIA complex IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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