ENSGALG00000011171


Gallus gallus

Features
Gene ID: ENSGALG00000011171
  
Biological name :TBP
  
Synonyms : TATA-box-binding protein / TBP
  
Possible biological names infered from orthology : P20226 / P29037
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 40844454
Gene end: 40855357
  
Corresponding Affymetrix probe sets: Gga.1006.1.S1_at (Chicken Array)   Gga.1006.1.S2_at (Chicken Array)   Gga.1006.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000057495
Ensembl peptide - ENSGALP00000061422
Ensembl peptide - ENSGALP00000060826
Ensembl peptide - ENSGALP00000036925
Ensembl peptide - ENSGALP00000049852
NCBI entrez gene - 395995     See in Manteia.
RefSeq - NM_205103
RefSeq - XM_015284048
RefSeq - XM_015284047
RefSeq Peptide - NP_990434
swissprot - A0A1L1RPU7
swissprot - Q6JLB1
swissprot - F7BGR1
swissprot - A0A1D5PAT8
Ensembl - ENSGALG00000011171
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbpENSDARG00000014994Danio rerio
 TBPENSG00000112592Homo sapiens
 TbpENSMUSG00000014767Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBPL2 / TATA-box binding protein like 2 / Q6SJ95* / Q6SJ96* / TATA box-binding protein-like protein 2 *ENSGALG0000001214567
TBPL1 / Q9YGV8 / TATA box-binding protein-like protein 1 / P62380* / P62340* / TATA-box binding protein like 1*ENSGALG0000001398124


Protein motifs (from Interpro)
Interpro ID Name
 IPR000814  TATA-box binding protein
 IPR012295  TBP domain superfamily
 IPR030491  TATA-box binding protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0001939 female pronucleus IEA
 cellular_componentGO:0001940 male pronucleus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005672 transcription factor TFIIA complex IEA
 cellular_componentGO:0005719 nuclear euchromatin IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0045120 pronucleus IEA
 cellular_componentGO:0097550 transcriptional preinitiation complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0001093 TFIIB-class transcription factor binding IEA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0001129 RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0017162 aryl hydrocarbon receptor binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0070491 repressing transcription factor binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003793 GTF2A2 / general transcription factor IIA subunit 2 / P52657* / Q80ZM7* / Transcription initiation factor IIA subunit 2 *  / complex / reaction
 ENSGALG00000004570 NCOA3 / nuclear receptor coactivator 3 / Q9Y6Q9*  / reaction / complex
 ENSGALG00000016617 NCOA1 / nuclear receptor coactivator 1 / P70365* / Q15788*  / reaction / complex
 ENSGALG00000011705 BRF1 / BRF1, RNA polymerase III transcription initiation factor subunit / Q92994* / BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit*  / complex
 ENSGALG00000010576 GTF2A1 / general transcription factor IIA subunit 1 / P52655* / Q99PM3* / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiat...  / complex / reaction
 ENSGALG00000011992 EP300 / E1A binding protein p300 / B2RWS6* / Q09472* / Histone acetyltransferase p300 *  / complex / reaction
 ENSGALG00000003124 BRF2 / BRF2, RNA polymerase III transcription initiation factor subunit / Q9HAW0*  / complex
 ENSGALG00000029270 GATA3 / P23825 / GATA-binding factor 3 / P23771* / P23772* / GATA binding protein 3* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*  / reaction / complex
 ENSGALG00000032713 FOXA1 / forkhead box A1 / P35582* / P55317* / Hepatocyte nuclear factor 3-alpha *  / reaction / complex






 

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