ENSG00000112592


Homo sapiens

Features
Gene ID: ENSG00000112592
  
Biological name :TBP
  
Synonyms : P20226 / TATA-box binding protein / TBP
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q27
Gene start: 170554302
Gene end: 170572870
  
Corresponding Affymetrix probe sets: 203135_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000442132
Ensembl peptide - ENSP00000484118
Ensembl peptide - ENSP00000490461
Ensembl peptide - ENSP00000230354
Ensembl peptide - ENSP00000375942
Ensembl peptide - ENSP00000400008
Ensembl peptide - ENSP00000404905
Ensembl peptide - ENSP00000416482
NCBI entrez gene - 6908     See in Manteia.
OMIM - 600075
RefSeq - NM_001172085
RefSeq - NM_003194
RefSeq Peptide - NP_001165556
RefSeq Peptide - NP_003185
swissprot - Q7Z6S4
swissprot - A0A1B0GVC6
swissprot - Q7Z6S5
swissprot - H0Y6D8
swissprot - P20226
swissprot - Q32MN6
Ensembl - ENSG00000112592
  
Related genetic diseases (OMIM): 168600 - {Parkinson disease, susceptibility to}, 168600
  607136 - Spinocerebellar ataxia 17, 607136

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbpENSDARG00000014994Danio rerio
 TBPENSGALG00000011171Gallus gallus
 TbpENSMUSG00000014767Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBPL2 / Q6SJ96 / TATA-box binding protein like 2ENSG0000018252160
TBPL1 / P62380 / TATA-box binding protein like 1ENSG0000002883922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000814  TATA-box binding protein
 IPR011989  Armadillo-like helical
 IPR029058  Alpha/Beta hydrolase fold
 IPR030491  TATA-box binding protein, conserved site
 IPR033710  TATA-box binding protein, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006359 regulation of transcription by RNA polymerase III IEA
 biological_processGO:0006361 transcription initiation from RNA polymerase I promoter TAS
 biological_processGO:0006362 transcription elongation from RNA polymerase I promoter TAS
 biological_processGO:0006363 termination of RNA polymerase I transcription TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter TAS
 biological_processGO:0006383 transcription by RNA polymerase III IDA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0045815 positive regulation of gene expression, epigenetic TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IDA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0001939 female pronucleus IEA
 cellular_componentGO:0001940 male pronucleus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005672 transcription factor TFIIA complex IDA
 cellular_componentGO:0005719 nuclear euchromatin IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0032991 protein-containing complex IMP
 cellular_componentGO:0045120 pronucleus IEA
 cellular_componentGO:0097550 transcriptional preinitiation complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0001093 TFIIB-class transcription factor binding IPI
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0001129 RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0017162 aryl hydrocarbon receptor binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0070491 repressing transcription factor binding IPI


Pathways (from Reactome)
Pathway description
HIV Transcription Initiation
RNA Polymerase II HIV Promoter Escape
Transcription of the HIV genome
SIRT1 negatively regulates rRNA expression
NoRC negatively regulates rRNA expression
B-WICH complex positively regulates rRNA expression
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
Show

 HP:0000473 Torticollis 
Show

 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
Show

 HP:0000643 Blepharospasm "An involuntary recurrent spasm of both eyelids." [HPO:curators]
Show

 HP:0000708 Behavioural/Psychiatric Abnormality 
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
Show

 HP:0000727 Frontal lobe dementia 
Show

 HP:0000738 Hallucinations 
Show

 HP:0000743 Frontal release signs 
Show

 HP:0000757 Lack of insight 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001268 Mental deterioration 
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
Show

 HP:0001300 Parkinsonism 
Show

 HP:0001310 Dysmetria 
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002063 Rigidity 
Show

 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
Show

 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
Show

 HP:0002070 Limb ataxia 
Show

 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
Show

 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
Show

 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
Show

 HP:0002171 Gliosis 
Show

 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
Show

 HP:0002300 Mutism 
Show

 HP:0002356 Writer s cramp 
Show

 HP:0002403 Positive Romberg sign 
Show

 HP:0002506 Diffuse cerebral atrophy 
Show

 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0007058 Generalized cerebral hypoplasia/atrophy 
Show

 HP:0007256 Mild pyramidal signs 
Show

 HP:0007366 Atrophy/Degeneration affecting the brainstem 
Show

 HP:0007668 Impaired pursuit initiation and maintenance 
Show

 HP:0011999 Paranoia "A persecutory delusion of supposed hostility of others." [HPO:probinson]
Show

 HP:0012082 Cerebellar Purkinje layer atrophy "Atrophy of the cerebellum affecting primarily the Purkinje cell layer." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000126457 PRMT1 / Q99873 / protein arginine methyltransferase 1  / reaction / complex
 ENSG00000143190 P14859 / POU2F1 / POU class 2 homeobox 1  / reaction / complex
 ENSG00000145734 BDP1 / A6H8Y1 / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB  / complex
 ENSG00000108654 DDX5 / P17844 / DEAD-box helicase 5  / reaction / complex
 ENSG00000166478 P52747 / ZNF143 / zinc finger protein 143  / complex / reaction
 ENSG00000104221 BRF2 / Q9HAW0 / BRF2, RNA polymerase III transcription initiation factor subunit  / complex
 ENSG00000129514 FOXA1 / P55317 / forkhead box A1  / complex / reaction
 ENSG00000185024 BRF1 / Q92994 / BRF1, RNA polymerase III transcription initiation factor subunit  / complex
 ENSG00000165417 GTF2A1 / P52655 / general transcription factor IIA subunit 1  / complex / reaction
 ENSG00000142453 CARM1 / Q86X55 / coactivator associated arginine methyltransferase 1  / reaction / complex
 ENSG00000107485 GATA3 / P23771 / GATA binding protein 3  / complex / reaction
 ENSG00000091831 ESR1 / P03372 / estrogen receptor 1  / reaction / complex
 ENSG00000140307 GTF2A2 / P52657 / general transcription factor IIA subunit 2  / reaction / complex
 ENSG00000122034 GTF3A / Q92664 / general transcription factor IIIA  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr