ENSG00000145734


Homo sapiens

Features
Gene ID: ENSG00000145734
  
Biological name :BDP1
  
Synonyms : A6H8Y1 / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB / BDP1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q13.2
Gene start: 71455615
Gene end: 71567820
  
Corresponding Affymetrix probe sets: 224227_s_at (Human Genome U133 Plus 2.0 Array)   226290_at (Human Genome U133 Plus 2.0 Array)   231939_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421910
Ensembl peptide - ENSP00000432404
Ensembl peptide - ENSP00000351575
Ensembl peptide - ENSP00000370050
NCBI entrez gene - 55814     See in Manteia.
OMIM - 607012
RefSeq - XM_017009634
RefSeq - XM_011543512
RefSeq - XM_017009630
RefSeq - XM_017009631
RefSeq - XM_017009632
RefSeq - XM_017009633
RefSeq - NM_018429
RefSeq - XM_011543511
RefSeq Peptide - NP_060899
swissprot - A6H8Y1
swissprot - H0YCV8
swissprot - H7C5U4
swissprot - A0A0A0MRX7
Ensembl - ENSG00000145734
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-204c21.1ENSDARG00000102375Danio rerio
 zgc:162472ENSDARG00000058630Danio rerio
 ENSGALG00000002439Gallus gallus
 Bdp1ENSMUSG00000049658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR030701  Transcription factor TFIIIB component B""


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006359 regulation of transcription by RNA polymerase III IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0070898 RNA polymerase III transcriptional preinitiation complex assembly IBA
 cellular_componentGO:0000126 transcription factor TFIIIB complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0001026 obsolete TFIIIB-type transcription factor activity IEA
 molecular_functionGO:0001156 TFIIIC-class transcription factor binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000112592 TBP / P20226 / TATA-box binding protein  / complex
 ENSG00000185024 BRF1 / Q92994 / BRF1, RNA polymerase III transcription initiation factor subunit  / complex
 ENSG00000143190 P14859 / POU2F1 / POU class 2 homeobox 1  / reaction / complex
 ENSG00000166478 P52747 / ZNF143 / zinc finger protein 143  / complex / reaction
 ENSG00000104221 BRF2 / Q9HAW0 / BRF2, RNA polymerase III transcription initiation factor subunit  / complex
 ENSG00000122034 GTF3A / Q92664 / general transcription factor IIIA  / complex / reaction






 

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