ENSMUSG00000049658


Mus musculus

Features
Gene ID: ENSMUSG00000049658
  
Biological name :Bdp1
  
Synonyms : Bdp1 / Q571C7 / Transcription factor TFIIIB component B homolog
  
Possible biological names infered from orthology : A6H8Y1 / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: D1
Gene start: 100017994
Gene end: 100104070
  
Corresponding Affymetrix probe sets: 10411552 (MoGene1.0st)   1434284_at (Mouse Genome 430 2.0 Array)   1437919_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000038321
Ensembl peptide - ENSMUSP00000096868
Ensembl peptide - ENSMUSP00000105005
Ensembl peptide - ENSMUSP00000126435
NCBI entrez gene - 544971     See in Manteia.
MGI - MGI:1347077
RefSeq - XM_017315546
RefSeq - XM_006517726
RefSeq - XM_017315543
RefSeq - XM_017315544
RefSeq - XM_017315545
RefSeq - NM_001081061
RefSeq - XM_006517725
RefSeq Peptide - NP_001074530
swissprot - F8VQC2
swissprot - E9PYY8
swissprot - Q571C7
Ensembl - ENSMUSG00000049658
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-204c21.1ENSDARG00000102375Danio rerio
 zgc:162472ENSDARG00000058630Danio rerio
 ENSGALG00000002439Gallus gallus
 BDP1ENSG00000145734Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR030701  Transcription factor TFIIIB component B""


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated ISA
 biological_processGO:0006359 regulation of transcription by RNA polymerase III IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0070898 RNA polymerase III transcriptional preinitiation complex assembly IBA
 cellular_componentGO:0000126 transcription factor TFIIIB complex IEA
 cellular_componentGO:0005634 nucleus ISO
 molecular_functionGO:0001026 obsolete TFIIIB-type transcription factor activity IEA
 molecular_functionGO:0001156 TFIIIC-class transcription factor binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000011158 Brf1 / BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit / Q92994* / BRF1, RNA polymerase III transcription initiation factor subunit*  / complex
 ENSMUSG00000014767 Tbp / P29037 / TATA box binding protein / P20226*  / complex
 ENSMUSG00000031487 Brf2 / BRF2, RNA polymerase III transcription initiation factor subunit / Q9HAW0*  / complex
 ENSMUSG00000061079 O70230 / Zfp143 / zinc finger protein 143 / P52747* / ZNF143*  / complex / reaction
 ENSMUSG00000026565 P25425 / Pou2f1 / POU domain, class 2, transcription factor 1 / P14859* / POU class 2 homeobox 1*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr