ENSDARG00000058630


Danio rerio

Features
Gene ID: ENSDARG00000058630
  
Biological name :zgc:162472
  
Synonyms : zgc:162472
  
Possible biological names infered from orthology : A6H8Y1 / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB / BDP1 / Q571C7 / Transcription factor TFIIIB component B homolog
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 11330234
Gene end: 11367271
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126041
Ensembl peptide - ENSDARP00000125788
NCBI entrez gene - 553495     See in Manteia.
RefSeq - NM_001083820
RefSeq - XM_005161021
RefSeq - XM_009295207
RefSeq - XM_009295206
RefSeq - XM_017352778
RefSeq - XM_017352777
RefSeq Peptide - NP_001077289
swissprot - I3ISZ0
swissprot - I3ISB6
ZFIN ID - ZDB-GENE-050809-88
Ensembl - ENSDARG00000058630
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002439Gallus gallus
 BDP1ENSG00000145734Homo sapiens
 Bdp1ENSMUSG00000049658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-204c21.1 / BDP1* / A6H8Y1* / Q571C7* / Transcription factor TFIIIB component B homolog * / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB*ENSDARG0000010237528


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR030701  Transcription factor TFIIIB component B""


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006359 regulation of transcription by RNA polymerase III IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 cellular_componentGO:0000126 transcription factor TFIIIB complex IEA
 molecular_functionGO:0001026 obsolete TFIIIB-type transcription factor activity IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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