ENSMUSG00000011158


Mus musculus

Features
Gene ID: ENSMUSG00000011158
  
Biological name :Brf1
  
Synonyms : Brf1 / BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
  
Possible biological names infered from orthology : BRF1, RNA polymerase III transcription initiation factor subunit / Q92994
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: F1
Gene start: 112960085
Gene end: 113000704
  
Corresponding Affymetrix probe sets: 10402841 (MoGene1.0st)   1453209_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000011302
NCBI entrez gene - 72308     See in Manteia.
MGI - MGI:1919558
RefSeq - XM_017315211
RefSeq - NM_028193
RefSeq - XM_011244184
RefSeq - XM_011244185
RefSeq - XM_006516260
RefSeq - XM_006516261
RefSeq - XM_006516266
RefSeq - XM_006516267
RefSeq - XM_011244182
RefSeq - XM_011244183
RefSeq Peptide - NP_082469
swissprot - G3X8S2
Ensembl - ENSMUSG00000011158
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 brf1aENSDARG00000017835Danio rerio
 brf1bENSDARG00000005002Danio rerio
 BRF1ENSGALG00000011705Gallus gallus
 BRF1ENSG00000185024Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000812  Transcription factor TFIIB
 IPR011665  Brf1, TBP-binding domain
 IPR013137  Zinc finger, TFIIB-type
 IPR013150  Transcription factor TFIIB, cyclin-like domain
 IPR013763  Cyclin-like
 IPR029529  Transcription factor IIIB subunit Brf1
 IPR036915  Cyclin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0006413 translational initiation IEA
 biological_processGO:0045945 positive regulation of transcription by RNA polymerase III IEA
 biological_processGO:0070897 DNA-templated transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0000126 transcription factor TFIIIB complex IEA
 molecular_functionGO:0001026 obsolete TFIIIB-type transcription factor activity IEA
 molecular_functionGO:0003743 translation initiation factor activity IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000014767 Tbp / P29037 / TATA box binding protein / P20226*  / complex
 ENSMUSG00000049658 Bdp1 / Q571C7 / Transcription factor TFIIIB component B homolog / A6H8Y1* / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr