ENSG00000185024


Homo sapiens

Features
Gene ID: ENSG00000185024
  
Biological name :BRF1
  
Synonyms : BRF1 / BRF1, RNA polymerase III transcription initiation factor subunit / Q92994
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q32.33
Gene start: 105209286
Gene end: 105315589
  
Corresponding Affymetrix probe sets: 1552399_a_at (Human Genome U133 Plus 2.0 Array)   203754_s_at (Human Genome U133 Plus 2.0 Array)   215676_at (Human Genome U133 Plus 2.0 Array)   215677_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449788
Ensembl peptide - ENSP00000449173
Ensembl peptide - ENSP00000450258
Ensembl peptide - ENSP00000480452
Ensembl peptide - ENSP00000329029
Ensembl peptide - ENSP00000369264
Ensembl peptide - ENSP00000369269
Ensembl peptide - ENSP00000376340
Ensembl peptide - ENSP00000388877
Ensembl peptide - ENSP00000389859
Ensembl peptide - ENSP00000446707
Ensembl peptide - ENSP00000446901
Ensembl peptide - ENSP00000447521
Ensembl peptide - ENSP00000448387
Ensembl peptide - ENSP00000448723
Ensembl peptide - ENSP00000448823
NCBI entrez gene - 2972     See in Manteia.
OMIM - 604902
RefSeq - NM_001242790
RefSeq - NM_001242786
RefSeq - NM_001242787
RefSeq - NM_001242788
RefSeq - NM_001242789
RefSeq - NM_001519
RefSeq - NM_145685
RefSeq - XM_005267561
RefSeq - XM_005267563
RefSeq - XM_006720123
RefSeq - XM_011536672
RefSeq - XM_011536673
RefSeq - XM_011536674
RefSeq Peptide - NP_001229716
RefSeq Peptide - NP_001229717
RefSeq Peptide - NP_001229718
RefSeq Peptide - NP_001229719
RefSeq Peptide - NP_001510
RefSeq Peptide - NP_663718
RefSeq Peptide - NP_001229715
swissprot - F8VWY1
swissprot - F8VXJ4
swissprot - F8W123
swissprot - H0YIV6
swissprot - A0A024R6P8
swissprot - Q3SYD7
swissprot - Q92994
swissprot - V9HVY2
swissprot - A3KN61
swissprot - F6VUY7
swissprot - F8VS45
swissprot - F8VWT8
Ensembl - ENSG00000185024
  
Related genetic diseases (OMIM): 616202 - Cerebellofaciodental syndrome, 616202
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 brf1aENSDARG00000017835Danio rerio
 brf1bENSDARG00000005002Danio rerio
 BRF1ENSGALG00000011705Gallus gallus
 Brf1ENSMUSG00000011158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000812  Transcription factor TFIIB
 IPR011665  Brf1, TBP-binding domain
 IPR013137  Zinc finger, TFIIB-type
 IPR013150  Transcription factor TFIIB, cyclin-like domain
 IPR013763  Cyclin-like
 IPR029529  Transcription factor IIIB subunit Brf1
 IPR036915  Cyclin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006359 regulation of transcription by RNA polymerase III IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0006384 transcription initiation from RNA polymerase III promoter TAS
 biological_processGO:0006413 translational initiation IEA
 biological_processGO:0009303 rRNA transcription TAS
 biological_processGO:0009304 tRNA transcription TAS
 biological_processGO:0045945 positive regulation of transcription by RNA polymerase III IEA
 biological_processGO:0070897 DNA-templated transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0000126 transcription factor TFIIIB complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0001026 obsolete TFIIIB-type transcription factor activity IEA
 molecular_functionGO:0003743 translation initiation factor activity IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000535 Sparse eyebrows 
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 HP:0000675 Prominent upper central incisors 
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 HP:0000679 Taurodontia 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0001182 Tapered fingers 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001601 Laryngomalacia 
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 HP:0002213 Fine hair 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003100 Thin long bones 
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 HP:0003593 Early onset 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006511 Laryngeal stridor 
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 HP:0008070 Sparse hair 
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 HP:0012110 Hypoplasia of the pons "Underdevelopment of the `pons` (FMA:67943)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000112592 TBP / P20226 / TATA-box binding protein  / complex
 ENSG00000145734 BDP1 / A6H8Y1 / B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB  / complex
 ENSG00000122034 GTF3A / Q92664 / general transcription factor IIIA  / complex / reaction






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr