ENSGALG00000006205


Gallus gallus

Features
Gene ID: ENSGALG00000006205
  
Biological name :GTF2B
  
Synonyms : general transcription factor IIB / GTF2B
  
Possible biological names infered from orthology : P62915 / Q00403 / Transcription initiation factor IIB
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 15196033
Gene end: 15213769
  
Corresponding Affymetrix probe sets: Gga.10024.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010001
Ensembl peptide - ENSGALP00000060224
Ensembl peptide - ENSGALP00000048224
NCBI entrez gene - 424518     See in Manteia.
RefSeq - XM_015290646
RefSeq - XM_422356
swissprot - A0A1L1RN70
swissprot - A0A1D5P699
swissprot - F1NXP2
Ensembl - ENSGALG00000006205
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2bENSDARG00000103578Danio rerio
 GTF2BENSG00000137947Homo sapiens
 Gtf2bENSMUSG00000028271Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000812  Transcription factor TFIIB
 IPR013137  Zinc finger, TFIIB-type
 IPR013150  Transcription factor TFIIB, cyclin-like domain
 IPR013763  Cyclin-like
 IPR023486  Transcription factor TFIIB, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0006473 protein acetylation IEA
 biological_processGO:0043923 positive regulation by host of viral transcription IEA
 biological_processGO:0050434 positive regulation of viral transcription IEA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0070897 DNA-templated transcriptional preinitiation complex assembly IEA
 biological_processGO:1904798 positive regulation of core promoter binding IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0097550 transcriptional preinitiation complex IEA
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000993 RNA polymerase II core binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0016407 acetyltransferase activity IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046966 thyroid hormone receptor binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000010576 GTF2A1 / general transcription factor IIA subunit 1 / P52655* / Q99PM3* / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiat...  / reaction / complex
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / complex / reaction
 ENSGALG00000003793 GTF2A2 / general transcription factor IIA subunit 2 / P52657* / Q80ZM7* / Transcription initiation factor IIA subunit 2 *  / reaction / complex
 ENSGALG00000042320 GTF2E1 / general transcription factor IIE subunit 1 / P29083* / Q9D0D5* / Mus musculusral transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), transcript variant 2, mRNA.*  / complex / reaction






 

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