ENSDARG00000103578


Danio rerio

Features
Gene ID: ENSDARG00000103578
  
Biological name :gtf2b
  
Synonyms : general transcription factor IIB / gtf2b
  
Possible biological names infered from orthology : P62915 / Q00403 / Transcription initiation factor IIB
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 22480074
Gene end: 22492289
  
Corresponding Affymetrix probe sets: Dr.11866.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137822
NCBI entrez gene - 324823     See in Manteia.
RefSeq - NM_199697
RefSeq Peptide - NP_955991
swissprot - A0A0R4IRB5
ZFIN ID - ZDB-GENE-030131-3544
Ensembl - ENSDARG00000103578
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2BENSGALG00000006205Gallus gallus
 GTF2BENSG00000137947Homo sapiens
 Gtf2bENSMUSG00000028271Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000812  Transcription factor TFIIB
 IPR013137  Zinc finger, TFIIB-type
 IPR013150  Transcription factor TFIIB, cyclin-like domain
 IPR013763  Cyclin-like
 IPR023486  Transcription factor TFIIB, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0070897 DNA-templated transcriptional preinitiation complex assembly IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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