ENSGALG00000042011


Gallus gallus

Features
Gene ID: ENSGALG00000042011
  
Biological name :HNRNPA1
  
Synonyms : Gallus gallus heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), mRNA. / HNRNPA1
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein A1 / heterogeneous nuclear ribonucleoprotein A1-like 2 / heterogeneous nuclear ribonucleoprotein A1 pseudogene 48 / Heteroous nuclear ribonucleoprotein A1 Heteroous nuclear ribonucleoprotein A1, N-terminally processed / HNRNPA1L2 / HNRNPA1P48 / P09651 / P49312 / Q32P51
  
Species: Gallus gallus
  
Chr. number: 33
Strand: 1
Band:
Gene start: 1158787
Gene end: 1164323
  
Corresponding Affymetrix probe sets: Gga.13250.1.A1_at (Chicken Array)   Gga.17805.1.S1_at (Chicken Array)   GgaAffx.11924.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047929
Ensembl peptide - ENSGALP00000059954
Ensembl peptide - ENSGALP00000059490
Ensembl peptide - ENSGALP00000045418
NCBI entrez gene - 424136     See in Manteia.
RefSeq - XM_015300358
RefSeq - NM_001318418
RefSeq - XM_015300354
RefSeq - XM_015300355
RefSeq - XM_015300356
RefSeq - XM_015300357
RefSeq Peptide - NP_001305347
swissprot - A0A1L1RME4
swissprot - A0A1L1RL45
swissprot - A0A1D5P5G1
swissprot - Q5ZLB3
Ensembl - ENSGALG00000042011
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpa1aENSDARG00000011020Danio rerio
 hnrnpa1bENSDARG00000036675Danio rerio
 HNRNPA1P48ENSG00000224578Homo sapiens
 P09651ENSG00000135486Homo sapiens
 Q32P51ENSG00000139675Homo sapiens
 P49312ENSMUSG00000046434Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNRNPA3 / heterogeneous nuclear ribonucleoprotein A3 / Gm9242* / Gm6793* / P51991* / Q8BG05* / Gm17190* / Heteroous nuclear ribonucleoprotein A3 *ENSGALG0000000925068
HNRNPA2B1 / heterogeneous nuclear ribonucleoprotein A2/B1 / O88569* / P22626* / Heteroous nuclear ribonucleoproteins A2/B1 *ENSGALG0000001103659
HNRNPA0 / heterogeneous nuclear ribonucleoprotein A0 / Q13151* / Q9CX86* / Heteroous nuclear ribonucleoprotein A0 *ENSGALG0000000616043


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR021662  Nuclear factor hnRNPA1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001962 PTBP1 / polypyrimidine tract-binding protein 1 / P26599*  / complex / reaction
 ENSGALG00000006843 NCBP2 / A6PVI3* / NCBP2L* / P52298* / Q9CQ49* / nuclear cap binding protein subunit 2* / nuclear cap binding protein subunit 2 like*  / reaction / complex
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / reaction / complex
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / complex / reaction






 

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