ENSGALG00000011036


Gallus gallus

Features
Gene ID: ENSGALG00000011036
  
Biological name :HNRNPA2B1
  
Synonyms : heterogeneous nuclear ribonucleoprotein A2/B1 / HNRNPA2B1
  
Possible biological names infered from orthology : Heteroous nuclear ribonucleoproteins A2/B1 / O88569 / P22626
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 32241186
Gene end: 32252547
  
Corresponding Affymetrix probe sets: Gga.18944.1.S1_a_at (Chicken Array)   Gga.18944.1.S1_x_at (Chicken Array)   Gga.4891.1.S1_s_at (Chicken Array)   GgaAffx.11546.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017954
Ensembl peptide - ENSGALP00000056944
NCBI entrez gene - 420627     See in Manteia.
RefSeq - XM_015281466
RefSeq - NM_001030985
RefSeq - XM_015281463
RefSeq - XM_015281464
RefSeq - XM_015281454
RefSeq - XM_015281455
RefSeq - XM_015281456
RefSeq - XM_015281457
RefSeq - XM_015281458
RefSeq - XM_015281460
RefSeq - XM_015281461
RefSeq - XM_015281462
RefSeq Peptide - NP_001026156
swissprot - Q5ZME1
Ensembl - ENSGALG00000011036
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P22626ENSG00000122566Homo sapiens
 O88569ENSMUSG00000004980Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNRNPA3 / heterogeneous nuclear ribonucleoprotein A3 / Gm9242* / Gm6793* / P51991* / Q8BG05* / Gm17190* / Heteroous nuclear ribonucleoprotein A3 *ENSGALG0000000925072
HNRNPA1 / Gallus gallus heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), mRNA. / Q32P51* / P49312* / P09651* / HNRNPA1L2* / HNRNPA1P48* / heterogeneous nuclear ribonucleoprotein A1* / ...ENSGALG0000004201162
HNRNPA0 / heterogeneous nuclear ribonucleoprotein A0 / Q13151* / Q9CX86* / Heteroous nuclear ribonucleoprotein A0 *ENSGALG0000000616046


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0031053 primary miRNA processing IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0050658 RNA transport IEA
 biological_processGO:1990428 miRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0070062 extracellular exosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0035198 miRNA binding IEA
 molecular_functionGO:0043047 single-stranded telomeric DNA binding IEA
 molecular_functionGO:0097157 pre-mRNA intronic binding IEA
 molecular_functionGO:1990247 N6-methyladenosine-containing RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr