ENSG00000135486


Homo sapiens

Features
Gene ID: ENSG00000135486
  
Biological name :HNRNPA1
  
Synonyms : heterogeneous nuclear ribonucleoprotein A1 / HNRNPA1 / P09651
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.13
Gene start: 54280193
Gene end: 54287088
  
Corresponding Affymetrix probe sets: 200016_x_at (Human Genome U133 Plus 2.0 Array)   213356_x_at (Human Genome U133 Plus 2.0 Array)   214280_x_at (Human Genome U133 Plus 2.0 Array)   221919_at (Human Genome U133 Plus 2.0 Array)   222040_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000448229
Ensembl peptide - ENSP00000448617
Ensembl peptide - ENSP00000449913
Ensembl peptide - ENSP00000448917
Ensembl peptide - ENSP00000333504
Ensembl peptide - ENSP00000341826
Ensembl peptide - ENSP00000446486
Ensembl peptide - ENSP00000447260
Ensembl peptide - ENSP00000447782
Ensembl peptide - ENSP00000448117
NCBI entrez gene - 3178     See in Manteia.
OMIM - 164017
RefSeq - NM_031157
RefSeq - NM_002136
RefSeq - XM_005268826
RefSeq - XM_017019251
RefSeq Peptide - NP_002127
RefSeq Peptide - NP_112420
swissprot - F8W6I7
swissprot - A0A024RB53
swissprot - P09651
swissprot - H0YH80
swissprot - A0A024RAZ7
swissprot - F8VTQ5
swissprot - F8VYN5
swissprot - F8VZ49
swissprot - F8W646
Ensembl - ENSG00000135486
  
Related genetic diseases (OMIM): 615424 - ?Inclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3, 615424
  615426 - Amyotrophic lateral sclerosis 20, 615426
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpa1aENSDARG00000011020Danio rerio
 hnrnpa1bENSDARG00000036675Danio rerio
 HNRNPA1ENSGALG00000042011Gallus gallus
 P49312ENSMUSG00000046434Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q32P51 / HNRNPA1L2 / heterogeneous nuclear ribonucleoprotein A1-like 2ENSG0000013967583
HNRNPA1P48 / heterogeneous nuclear ribonucleoprotein A1 pseudogene 48ENSG0000022457873
P51991 / HNRNPA3 / heterogeneous nuclear ribonucleoprotein A3ENSG0000017014470
P22626 / HNRNPA2B1 / heterogeneous nuclear ribonucleoprotein A2/B1ENSG0000012256659
Q13151 / HNRNPA0 / heterogeneous nuclear ribonucleoprotein A0ENSG0000017773344


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR021662  Nuclear factor hnRNPA1
 IPR034803  hnRNP A1, RNA recognition motif 2
 IPR034845  hnRNP A1, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IMP
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus IC
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0032211 negative regulation of telomere maintenance via telomerase IMP
 biological_processGO:0032212 positive regulation of telomere maintenance via telomerase IDA
 biological_processGO:0042149 cellular response to glucose starvation IMP
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0051168 nuclear export IDA
 biological_processGO:0051170 import into nucleus IDA
 biological_processGO:1903936 cellular response to sodium arsenite IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IC
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0035198 miRNA binding IDA
 molecular_functionGO:0036002 pre-mRNA binding IDA
 molecular_functionGO:0061752 telomeric repeat-containing RNA binding IDA
 molecular_functionGO:0098505 G-rich strand telomeric DNA binding IDA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000739 Anxiety 
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 HP:0001249 Mental retardation 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001293 Cranial nerve compression 
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 HP:0001397 Hepatic steatosis 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0002017 Nausea and vomiting 
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 HP:0002094 Dyspnea 
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 HP:0002145 Frontotemporal dementia 
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 HP:0002180 Neurodegeneration 
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 HP:0002300 Mutism 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002381 Aphasia 
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 HP:0002442 Dyscalculia 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002463 Language impairment 
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 HP:0002493 Corticospinal tract dysfunction 
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 HP:0002515 Waddling gait 
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 HP:0002648 Abnormality of skull shape "An abnormality of the shape of the skull." [HPO:curators]
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002797 Osteolysis 
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0002878 Early respiratory failure 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003198 Myopathy 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003307 Hyperlordosis 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003390 Sensory axonal neuropathy "An axonal neuropathy of peripheral sensory nerves." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003444 EMG shows chronic denervation 
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003805 Rimmed vacuoles 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004347 Abnormal weakness of muscles of respiration 
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 HP:0004490 Calvarial hyperostosis "Excessive growth of the calvarial bone." [HPO:curators]
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 HP:0005945 Laryngeal obstruction 
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 HP:0006785 Limb-girdle muscular dystrophy "Muscular dystrophy affecting the muscles of the limb girdle (the hips and shoulders)." [HPO:curators]
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 HP:0007002 Sensory and motor axonal neuropathy 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0008180 Mildly elevated creatine phosphokinase 
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 HP:0010991 Abnormality of the abdominal musculature "An abnormality of the `abdominal musculature` (FMA:86917)." [HPO:probinson]
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 HP:0011314 Abnormality of long bone morphology "An abnormality of size or shape of the `long bones` (FMA:7474)." [HPO:probinson]
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 HP:0012083 Ubiquitin-positive cerebral inclusion bodies "Nuclear or cytoplasmic aggregates that show positive staining with antibodies against ubiquitin within cells of the brain." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0012548 Skeletal muscle fatty infiltration "Deposition of fat within muscles." [HPO:probinson]
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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 HP:0030838 Hip pain "An unpleasant sensation characterized by physical discomfort (such as pricking, throbbing, or aching) localized to the hip." [UToronto:chum]
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 HP:0100299 Muscle fiber inclusion bodies 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000188342 GTF2F2 / P13984 / general transcription factor IIF subunit 2  / reaction / complex
 ENSG00000114503 NCBP2 / P52298 / nuclear cap binding protein subunit 2  / complex / reaction
 ENSG00000011304 PTBP1 / P26599 / polypyrimidine tract binding protein 1  / complex / reaction
 ENSG00000136937 NCBP1 / Q09161 / nuclear cap binding protein subunit 1  / reaction / complex
 ENSG00000125651 GTF2F1 / P35269 / general transcription factor IIF subunit 1  / complex / reaction






 

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