ENSDARG00000036675


Danio rerio

Features
Gene ID: ENSDARG00000036675
  
Biological name :hnrnpa1b
  
Synonyms : heterogeneous nuclear ribonucleoprotein A1b / hnrnpa1b
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein A1 / heterogeneous nuclear ribonucleoprotein A1-like 2 / heterogeneous nuclear ribonucleoprotein A1 pseudogene 48 / Heteroous nuclear ribonucleoprotein A1 Heteroous nuclear ribonucleoprotein A1, N-terminally processed / HNRNPA1 / HNRNPA1L2 / HNRNPA1P48 / P09651 / P49312 / Q32P51
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36306539
Gene end: 36310418
  
Corresponding Affymetrix probe sets: Dr.708.1.A1_at (Zebrafish Array)   NM_200104_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119496
Ensembl peptide - ENSDARP00000108932
Ensembl peptide - ENSDARP00000121434
Ensembl peptide - ENSDARP00000053266
NCBI entrez gene - 378453     See in Manteia.
RefSeq - NM_200104
RefSeq Peptide - NP_956398
swissprot - F1QS20
swissprot - F1QFV2
swissprot - F1R2T6
swissprot - F1R4I4
ZFIN ID - ZDB-GENE-030912-14
Ensembl - ENSDARG00000036675
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HNRNPA1ENSGALG00000042011Gallus gallus
 HNRNPA1P48ENSG00000224578Homo sapiens
 P09651ENSG00000135486Homo sapiens
 Q32P51ENSG00000139675Homo sapiens
 P49312ENSMUSG00000046434Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpa1a / heterogeneous nuclear ribonucleoprotein A1a / Q32P51* / P09651* / HNRNPA1* / HNRNPA1L2* / HNRNPA1P48* / heterogeneous nuclear ribonucleoprotein A1* / heterogeneous nuclear ribonu...ENSDARG0000001102073
hnrnpa3 / heterogeneous nuclear ribonucleoprotein A3 / Gm9242* / Gm6793* / P51991* / Q8BG05* / Gm17190* / Heteroous nuclear ribonucleoprotein A3 *ENSDARG0000005935159
hnrnpa0a / heterogeneous nuclear ribonucleoprotein A0a / Q9CX86* / Q13151* / HNRNPA0* / Heteroous nuclear ribonucleoprotein A0 * / heterogeneous nuclear ribonucleoprotein A0*ENSDARG0000008930242
hnrnpa0b / heterogeneous nuclear ribonucleoprotein A0b / Q9CX86* / Q13151* / HNRNPA0* / Heteroous nuclear ribonucleoprotein A0 * / heterogeneous nuclear ribonucleoprotein A0*ENSDARG0000003616242
hnrnpa0l / heterogeneous nuclear ribonucleoprotein A0, like / Q9CX86* / Q13151* / HNRNPA0* / Heteroous nuclear ribonucleoprotein A0 * / heterogeneous nuclear ribonucleoprotein A0*ENSDARG0000003616140


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR021662  Nuclear factor hnRNPA1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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