ENSGALG00000006843


Gallus gallus

Features
Gene ID: ENSGALG00000006843
  
Biological name :NCBP2
  
Synonyms : NCBP2
  
Possible biological names infered from orthology : A6PVI3 / NCBP2L / nuclear cap binding protein subunit 2 / nuclear cap binding protein subunit 2 like / P52298 / Q9CQ49
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 12448872
Gene end: 12485514
  
Corresponding Affymetrix probe sets: Gga.2541.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000011061
Ensembl peptide - ENSGALP00000044975
NCBI entrez gene - 424889     See in Manteia.
RefSeq - NM_001277449
RefSeq - NM_001277455
RefSeq Peptide - NP_001264384
RefSeq Peptide - NP_001264378
swissprot - A0A1D5NX82
swissprot - F1NIR6
Ensembl - ENSGALG00000006843
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ncbp2ENSDARG00000014898Danio rerio
 A6PVI3ENSG00000170935Homo sapiens
 NCBP2ENSG00000114503Homo sapiens
 Ncbp2ENSMUSG00000022774Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5ZKR5 / Nuclear cap-binding protein subunit 2 ENSGALG0000000575361


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR027157  Nuclear cap-binding protein subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0045292 mRNA cis splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005846 nuclear cap binding complex IEA
 molecular_functionGO:0000339 RNA cap binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
RNA Polymerase II Pre-transcription Events
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing
Processing of Capped Intron-Containing Pre-mRNA
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs
Processing of Intronless Pre-mRNAs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000000944 SUPT4H1 / SPT4 homolog, DSIF elongation factor subunit / P63272* / Supt4a* / P63271* / suppressor of Ty 4A*  / complex / reaction
 ENSGALG00000001962 PTBP1 / polypyrimidine tract-binding protein 1 / P26599*  / reaction / complex
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / complex / reaction
 ENSGALG00000008532 NELFB / negative elongation factor complex member B / Q8WX92* / negative elongation factor B isoform 1 *  / complex
 ENSGALG00000015712 SLBP / stem-loop binding protein / P97440* / Q14493*  / complex / reaction
 ENSGALG00000011863 POLDIP3 / DNA polymerase delta interacting protein 3 / Q8BG81* / Q9BY77* / Mus musculus polymerase (DNA-directed), delta interacting protein 3 (Poldip3), transcript variant 2, mRNA.*  / complex
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / complex / reaction
 ENSGALG00000008520 EIF4G1 / eukaryotic translation initiation factor 4 gamma 1 / Q04637* / Q6NZJ6*  / complex
 ENSGALG00000006760 CSTF2 / Q9H0L4* / CSTF2T* / Q8BIQ5* / Q8C7E9* / P33240* / cleavage stimulation factor subunit 2* / cleavage stimulation factor subunit 2 tau variant*  / complex / reaction
 ENSGALG00000012000 Q5ZK35 / METTL14 / N6-adenosine-methyltransferase non-catalytic subunit / Q3UIK4* / Q9HCE5* / methyltransferase like 14*  / reaction
 ENSGALG00000011685 CSTF3 / cleavage stimulation factor subunit 3 / Q12996* / Q99LI7*  / complex / reaction
 ENSGALG00000011660 WTAP / WT1 associated protein / Q15007* / Q9ER69* / Wilms tumour 1-associating protein*  / reaction
 ENSGALG00000042011 HNRNPA1 / Gallus gallus heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), mRNA. / Q32P51* / P49312* / P09651* / HNRNPA1L2* / HNRNPA1P48* / heterogeneous nuclear ribonucleoprotein A1* / ...  / complex / reaction
 ENSGALG00000039160 Q5ZI08 / SUPT5H / Transcription elongation factor SPT5 / Supt5* / O55201* / O00267* / SPT5 homolog, DSIF elongation factor subunit*  / complex / reaction
 ENSGALG00000031461 CTDP1 / CTD phosphatase subunit 1 / Q7TSG2* / Q9Y5B0* / RNA polymerase II subunit A C-terminal domain phosphatase *  / complex / reaction






 

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