ENSGALG00000006760


Gallus gallus

Features
Gene ID: ENSGALG00000006760
  
Biological name :CSTF2
  
Synonyms : CSTF2
  
Possible biological names infered from orthology : cleavage stimulation factor subunit 2 / cleavage stimulation factor subunit 2 tau variant / CSTF2T / P33240 / Q8BIQ5 / Q8C7E9 / Q9H0L4
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 5191319
Gene end: 5197869
  
Corresponding Affymetrix probe sets: Gga.7714.1.S1_s_at (Chicken Array)   Gga.7714.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010910
NCBI entrez gene - 422258     See in Manteia.
RefSeq - XM_015278274
RefSeq - NM_001006433
RefSeq - XM_015278275
RefSeq Peptide - NP_001006433
swissprot - Q5ZLS0
Ensembl - ENSGALG00000006760
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf2ENSDARG00000090788Danio rerio
 CSTF2ENSG00000101811Homo sapiens
 CSTF2TENSG00000177613Homo sapiens
 Cstf2ENSMUSG00000031256Mus musculus
 Cstf2tENSMUSG00000053536Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR025742  Cleavage stimulation factor subunit 2, hinge domain
 IPR026896  Transcription termination and cleavage factor, C-terminal domain
 IPR033105  Cleavage stimulation factor subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0031124 mRNA 3"-end processing IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / complex / reaction
 ENSGALG00000006843 NCBP2 / A6PVI3* / NCBP2L* / P52298* / Q9CQ49* / nuclear cap binding protein subunit 2* / nuclear cap binding protein subunit 2 like*  / reaction / complex
 ENSGALG00000011685 CSTF3 / cleavage stimulation factor subunit 3 / Q12996* / Q99LI7*  / complex






 

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