ENSG00000177613


Homo sapiens

Features
Gene ID: ENSG00000177613
  
Biological name :CSTF2T
  
Synonyms : cleavage stimulation factor subunit 2 tau variant / CSTF2T / Q9H0L4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q21.1
Gene start: 51695487
Gene end: 51699591
  
Corresponding Affymetrix probe sets: 212901_s_at (Human Genome U133 Plus 2.0 Array)   212905_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000332444
NCBI entrez gene - 23283     See in Manteia.
OMIM - 611968
RefSeq - NM_015235
RefSeq Peptide - NP_056050
swissprot - Q9H0L4
Ensembl - ENSG00000177613
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf2ENSDARG00000090788Danio rerio
 CSTF2ENSGALG00000006760Gallus gallus
 Cstf2tENSMUSG00000053536Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CSTF2 / P33240 / cleavage stimulation factor subunit 2ENSG0000010181169


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR025742  Cleavage stimulation factor subunit 2, hinge domain
 IPR026896  Transcription termination and cleavage factor, C-terminal domain
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000176102 CSTF3 / Q12996 / cleavage stimulation factor subunit 3  / complex
 ENSG00000114503 NCBP2 / P52298 / nuclear cap binding protein subunit 2  / reaction / complex
 ENSG00000101138 CSTF1 / Q05048 / cleavage stimulation factor subunit 1  / complex
 ENSG00000136937 NCBP1 / Q09161 / nuclear cap binding protein subunit 1  / complex / reaction






 

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