ENSG00000101138


Homo sapiens

Features
Gene ID: ENSG00000101138
  
Biological name :CSTF1
  
Synonyms : cleavage stimulation factor subunit 1 / CSTF1 / Q05048
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.2
Gene start: 56392371
Gene end: 56406369
  
Corresponding Affymetrix probe sets: 202190_at (Human Genome U133 Plus 2.0 Array)   32723_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387968
Ensembl peptide - ENSP00000479273
Ensembl peptide - ENSP00000477958
Ensembl peptide - ENSP00000409035
Ensembl peptide - ENSP00000405171
Ensembl peptide - ENSP00000217109
NCBI entrez gene - 1477     See in Manteia.
OMIM - 600369
RefSeq - XM_011528600
RefSeq - NM_001033521
RefSeq - NM_001033522
RefSeq - NM_001324
RefSeq Peptide - NP_001028694
RefSeq Peptide - NP_001028693
RefSeq Peptide - NP_001315
swissprot - Q05048
swissprot - A0A087WV92
swissprot - A3KFI9
swissprot - A0A0A0MSZ9
Ensembl - ENSG00000101138
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf1ENSDARG00000044820Danio rerio
 CSTF1ENSGALG00000007757Gallus gallus
 Cstf1ENSMUSG00000027498Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR032028  Cleavage stimulation factor subunit 1, dimerisation domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136937 NCBP1 / Q09161 / nuclear cap binding protein subunit 1  / reaction / complex
 ENSG00000114503 NCBP2 / P52298 / nuclear cap binding protein subunit 2  / reaction / complex
 ENSG00000176102 CSTF3 / Q12996 / cleavage stimulation factor subunit 3  / complex
 ENSG00000177613 CSTF2T / Q9H0L4 / cleavage stimulation factor subunit 2 tau variant  / complex
 ENSG00000101811 CSTF2 / P33240 / cleavage stimulation factor subunit 2  / complex






 

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