ENSMUSG00000027498


Mus musculus

Features
Gene ID: ENSMUSG00000027498
  
Biological name :Cstf1
  
Synonyms : Cleavage stimulation factor subunit 1 / Cstf1 / Q99LC2
  
Possible biological names infered from orthology : Q05048
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H3
Gene start: 172370681
Gene end: 172382448
  
Corresponding Affymetrix probe sets: 10478967 (MoGene1.0st)   1417117_at (Mouse Genome 430 2.0 Array)   1448597_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121178
Ensembl peptide - ENSMUSP00000112076
NCBI entrez gene - 67337     See in Manteia.
MGI - MGI:1914587
RefSeq - NM_024199
RefSeq - XM_006500072
RefSeq Peptide - NP_077161
swissprot - A2APA3
swissprot - Q99LC2
Ensembl - ENSMUSG00000027498
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf1ENSDARG00000044820Danio rerio
 CSTF1ENSGALG00000007757Gallus gallus
 CSTF1ENSG00000101138Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR032028  Cleavage stimulation factor subunit 1, dimerisation domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000022774 Ncbp2 / Q9CQ49 / Nuclear cap-binding protein subunit 2 / P52298*  / complex / reaction
 ENSMUSG00000031256 Cstf2 / Q8BIQ5 / Cleavage stimulation factor subunit 2 / P33240*  / complex
 ENSMUSG00000028330 Ncbp1 / Q3UYV9 / Nuclear cap-binding protein subunit 1 / Q09161*  / complex / reaction
 ENSMUSG00000027176 Cstf3 / Q99LI7 / Cleavage stimulation factor subunit 3 / Q12996*  / complex
 ENSMUSG00000053536 Cstf2t / Q8C7E9 / Cleavage stimulation factor subunit 2 tau variant / Q9H0L4*  / complex






 

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