ENSMUSG00000027176


Mus musculus

Features
Gene ID: ENSMUSG00000027176
  
Biological name :Cstf3
  
Synonyms : Cleavage stimulation factor subunit 3 / Cstf3 / Q99LI7
  
Possible biological names infered from orthology : Q12996
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: E2
Gene start: 104590523
Gene end: 104665429
  
Corresponding Affymetrix probe sets: 10474243 (MoGene1.0st)   1424723_s_at (Mouse Genome 430 2.0 Array)   1443909_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000028599
NCBI entrez gene - 228410     See in Manteia.
MGI - MGI:1351825
RefSeq - NM_145529
RefSeq Peptide - NP_663504
swissprot - Q99LI7
Ensembl - ENSMUSG00000027176
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf3ENSDARG00000018904Danio rerio
 CSTF3ENSGALG00000011685Gallus gallus
 CSTF3ENSG00000176102Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031123 RNA 3"-end processing IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000022774 Ncbp2 / Q9CQ49 / Nuclear cap-binding protein subunit 2 / P52298*  / complex / reaction
 ENSMUSG00000028330 Ncbp1 / Q3UYV9 / Nuclear cap-binding protein subunit 1 / Q09161*  / complex / reaction
 ENSMUSG00000053536 Cstf2t / Q8C7E9 / Cleavage stimulation factor subunit 2 tau variant / Q9H0L4*  / complex
 ENSMUSG00000027498 Cstf1 / Q99LC2 / Cleavage stimulation factor subunit 1 / Q05048*  / complex
 ENSMUSG00000031256 Cstf2 / Q8BIQ5 / Cleavage stimulation factor subunit 2 / P33240*  / complex






 

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