ENSG00000176102


Homo sapiens

Features
Gene ID: ENSG00000176102
  
Biological name :CSTF3
  
Synonyms : cleavage stimulation factor subunit 3 / CSTF3 / Q12996
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p13
Gene start: 33077188
Gene end: 33162371
  
Corresponding Affymetrix probe sets: 203947_at (Human Genome U133 Plus 2.0 Array)   229665_at (Human Genome U133 Plus 2.0 Array)   229666_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000393064
Ensembl peptide - ENSP00000435138
Ensembl peptide - ENSP00000434753
Ensembl peptide - ENSP00000431903
Ensembl peptide - ENSP00000431355
Ensembl peptide - ENSP00000315791
Ensembl peptide - ENSP00000388711
NCBI entrez gene - 1479     See in Manteia.
OMIM - 600367
RefSeq - NM_001033505
RefSeq - NM_001033506
RefSeq - NM_001326
RefSeq Peptide - NP_001317
RefSeq Peptide - NP_001028677
RefSeq Peptide - NP_001028678
swissprot - Q12996
swissprot - E9PLP8
swissprot - E9PJ06
swissprot - H0YE74
swissprot - E9PNK2
Ensembl - ENSG00000176102
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf3ENSDARG00000018904Danio rerio
 CSTF3ENSGALG00000011685Gallus gallus
 Cstf3ENSMUSG00000027176Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006378 mRNA polyadenylation TAS
 biological_processGO:0006379 mRNA cleavage TAS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114503 NCBP2 / P52298 / nuclear cap binding protein subunit 2  / reaction / complex
 ENSG00000101138 CSTF1 / Q05048 / cleavage stimulation factor subunit 1  / complex
 ENSG00000101811 CSTF2 / P33240 / cleavage stimulation factor subunit 2  / complex
 ENSG00000177613 CSTF2T / Q9H0L4 / cleavage stimulation factor subunit 2 tau variant  / complex
 ENSG00000136937 NCBP1 / Q09161 / nuclear cap binding protein subunit 1  / reaction / complex






 

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