ENSGALG00000011685


Gallus gallus

Features
Gene ID: ENSGALG00000011685
  
Biological name :CSTF3
  
Synonyms : cleavage stimulation factor subunit 3 / CSTF3
  
Possible biological names infered from orthology : Q12996 / Q99LI7
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 6997540
Gene end: 7041138
  
Corresponding Affymetrix probe sets: GgaAffx.7445.1.S1_at (Chicken Array)   GgaAffx.7445.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019081
Ensembl peptide - ENSGALP00000062372
Ensembl peptide - ENSGALP00000056755
NCBI entrez gene - 421595     See in Manteia.
RefSeq - NM_001012568
RefSeq Peptide - NP_001012586
swissprot - A0A1L1RU70
swissprot - A0A1D5PUZ7
swissprot - Q5F4A0
Ensembl - ENSGALG00000011685
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cstf3ENSDARG00000018904Danio rerio
 CSTF3ENSG00000176102Homo sapiens
 Cstf3ENSMUSG00000027176Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031123 RNA 3"-end processing IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006760 CSTF2 / Q9H0L4* / CSTF2T* / Q8BIQ5* / Q8C7E9* / P33240* / cleavage stimulation factor subunit 2* / cleavage stimulation factor subunit 2 tau variant*  / complex
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / reaction / complex
 ENSGALG00000006843 NCBP2 / A6PVI3* / NCBP2L* / P52298* / Q9CQ49* / nuclear cap binding protein subunit 2* / nuclear cap binding protein subunit 2 like*  / reaction / complex






 

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