ENSGALG00000015712


Gallus gallus

Features
Gene ID: ENSGALG00000015712
  
Biological name :SLBP
  
Synonyms : SLBP / stem-loop binding protein
  
Possible biological names infered from orthology : P97440 / Q14493
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 84514573
Gene end: 84521325
  
Corresponding Affymetrix probe sets: GgaAffx.10018.2.S1_s_at (Chicken Array)   GgaAffx.11747.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046217
Ensembl peptide - ENSGALP00000025292
NCBI entrez gene - 422902     See in Manteia.
RefSeq - NM_001004403
RefSeq Peptide - NP_001004403
swissprot - Q6B7Z7
swissprot - A0A1D5P0N9
Ensembl - ENSGALG00000015712
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slbpENSDARG00000100558Danio rerio
 SLBPENSG00000163950Homo sapiens
 SlbpENSMUSG00000004642Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000002945629


Protein motifs (from Interpro)
Interpro ID Name
 IPR026502  Histone RNA stem-loop-binding protein SLBP1/SLBP2
 IPR029344  Histone RNA hairpin-binding protein, RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IEA
 biological_processGO:0033260 nuclear DNA replication IEA
 biological_processGO:0044770 cell cycle phase transition IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0071207 histone pre-mRNA stem-loop binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000002087 NCBP1 / Q5ZJZ6 / Nuclear cap-binding protein subunit 1 / Q09161* / Q3UYV9*  / complex / reaction
 ENSGALG00000006843 NCBP2 / A6PVI3* / NCBP2L* / P52298* / Q9CQ49* / nuclear cap binding protein subunit 2* / nuclear cap binding protein subunit 2 like*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr