ENSMUSG00000004642


Mus musculus

Features
Gene ID: ENSMUSG00000004642
  
Biological name :Slbp
  
Synonyms : P97440 / Slbp / stem-loop binding protein
  
Possible biological names infered from orthology : Q14493
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: B2
Gene start: 33634952
Gene end: 33652574
  
Corresponding Affymetrix probe sets: 10412559 (MoGene1.0st)   10529299 (MoGene1.0st)   1430058_at (Mouse Genome 430 2.0 Array)   1437803_at (Mouse Genome 430 2.0 Array)   1460168_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000062930
Ensembl peptide - ENSMUSP00000098906
Ensembl peptide - ENSMUSP00000121978
Ensembl peptide - ENSMUSP00000144475
Ensembl peptide - ENSMUSP00000075093
NCBI entrez gene - 20492     See in Manteia.
MGI - MGI:108402
RefSeq - NM_001289724
RefSeq - NM_001289725
RefSeq - NM_009193
RefSeq Peptide - NP_001276654
RefSeq Peptide - NP_033219
RefSeq Peptide - NP_001276653
swissprot - Q3U4T7
swissprot - D3Z1S0
swissprot - Q3V2L1
swissprot - A0A0J9YV40
swissprot - Q8K2W7
swissprot - P97440
Ensembl - ENSMUSG00000004642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slbpENSDARG00000100558Danio rerio
 SLBPENSGALG00000015712Gallus gallus
 SLBPENSG00000163950Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026502  Histone RNA stem-loop-binding protein SLBP1/SLBP2
 IPR029344  Histone RNA hairpin-binding protein, RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IDA
 biological_processGO:0033260 nuclear DNA replication IEA
 biological_processGO:0044770 cell cycle phase transition IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0071207 histone pre-mRNA stem-loop binding IDA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000028330 Ncbp1 / Q3UYV9 / Nuclear cap-binding protein subunit 1 / Q09161*  / reaction / complex
 ENSMUSG00000022774 Ncbp2 / Q9CQ49 / Nuclear cap-binding protein subunit 2 / P52298*  / reaction / complex
 ENSMUSG00000048012 Q8BI67 / Zfp473 / zinc finger protein 473 / Q8WTR7* / ZNF473*  / reaction / complex






 

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