ENSDARG00000017606


Danio rerio

Features
Gene ID: ENSDARG00000017606
  
Biological name :sys1
  
Synonyms : sys1 / Sys1 golgi trafficking protein
  
Possible biological names infered from orthology : Gm20458 / Q78S06 / Q8N2H4 / SYS1-DBNDD2 / SYS1-DBNDD2 readthrough (NMD candidate) / SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 54438355
Gene end: 54444929
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128138
NCBI entrez gene - 336339     See in Manteia.
swissprot - E7FBT7
ZFIN ID - ZDB-GENE-030131-8283
Ensembl - ENSDARG00000017606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYS1ENSGALG00000003929Gallus gallus
 SYS1ENSG00000204070Homo sapiens
 SYS1-DBNDD2ENSG00000254806Homo sapiens
 Gm20458ENSMUSG00000090996Mus musculus
 Sys1ENSMUSG00000045503Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR016973  Integral membrane protein SYS1
 IPR019185  Integral membrane protein SYS1-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006895 Golgi to endosome transport IBA
 biological_processGO:0043001 Golgi to plasma membrane protein transport IBA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000057857 arfrp1 / ADP-ribosylation factor related protein 1 / Q13795* / Q8BXL7*  / reaction / complex
 ENSDARG00000101680 arl1 / ADP-ribosylation factor-like 1 / P40616* / P61211* / ADP ribosylation factor like GTPase 1* / ADP-ribosylation factor-like protein 1 *  / complex / reaction






 

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