ENSG00000204070


Homo sapiens

Features
Gene ID: ENSG00000204070
  
Biological name :SYS1
  
Synonyms : Q8N2H4 / SYS1 / SYS1, golgi trafficking protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.12
Gene start: 45361937
Gene end: 45376798
  
Corresponding Affymetrix probe sets: 224668_at (Human Genome U133 Plus 2.0 Array)   224669_at (Human Genome U133 Plus 2.0 Array)   224670_at (Human Genome U133 Plus 2.0 Array)   238470_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000406879
Ensembl peptide - ENSP00000403071
Ensembl peptide - ENSP00000416506
Ensembl peptide - ENSP00000243918
Ensembl peptide - ENSP00000361812
Ensembl peptide - ENSP00000397601
NCBI entrez gene - 90196     See in Manteia.
OMIM - 612979
RefSeq - NM_001099791
RefSeq - NM_033542
RefSeq - NM_001197129
RefSeq Peptide - NP_001093261
RefSeq Peptide - NP_291020
RefSeq Peptide - NP_001184058
swissprot - Q8N2H4
swissprot - E7ETM6
swissprot - F8WB21
swissprot - Q5QPU8
Ensembl - ENSG00000204070
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sys1ENSDARG00000017606Danio rerio
 SYS1ENSGALG00000003929Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYS1-DBNDD2 / SYS1-DBNDD2 readthrough (NMD candidate)ENSG0000025480652


Protein motifs (from Interpro)
Interpro ID Name
 IPR016973  Integral membrane protein SYS1
 IPR019185  Integral membrane protein SYS1-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006895 Golgi to endosome transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0043001 Golgi to plasma membrane protein transport IBA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IBA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101246 ARFRP1 / Q13795 / ADP ribosylation factor related protein 1  / complex / reaction
 ENSG00000120805 ARL1 / P40616 / ADP ribosylation factor like GTPase 1  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr