ENSDARG00000017634


Danio rerio

Features
Gene ID: ENSDARG00000017634
  
Biological name :pdcb
  
Synonyms : pdcb / phosducin b
  
Possible biological names infered from orthology : P20941 / PDC / phosducin / Q9QW08
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 34084331
Gene end: 34090740
  
Corresponding Affymetrix probe sets: Dr.12762.1.A1_at (Zebrafish Array)   NM_001025464_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000010853
Ensembl peptide - ENSDARP00000062538
NCBI entrez gene - 386614     See in Manteia.
RefSeq - NM_001025464
RefSeq Peptide - NP_001020635
swissprot - Q5RI07
swissprot - Q5RI08
ZFIN ID - ZDB-GENE-031023-2
Ensembl - ENSDARG00000017634
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDCENSGALG00000030417Gallus gallus
 PDCENSG00000116703Homo sapiens
 PdcENSMUSG00000006007Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdca / phosducin a / PDC* / P20941* / Q9QW08* / phosducin*ENSDARG0000001188668
pdcl / phosducin-like / Q13371* / Q9DBX2* / Phosducin-like protein *ENSDARG0000000948040


Protein motifs (from Interpro)
Interpro ID Name
 IPR001200  Phosducin
 IPR012336  Thioredoxin-like fold
 IPR023196  Phosducin, N-terminal domain superfamily
 IPR024253  Phosducin, thioredoxin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008616 queuosine biosynthetic process IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0008479 queuine tRNA-ribosyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr