ENSDARG00000017744


Danio rerio

Features
Gene ID: ENSDARG00000017744
  
Biological name :smc2
  
Synonyms : smc2 / structural maintenance of chromosomes 2
  
Possible biological names infered from orthology : O95347 / Q8CG48 / Structural maintenance of chromosomes protein 2
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 19535120
Gene end: 19561801
  
Corresponding Affymetrix probe sets: Dr.20402.1.A1_at (Zebrafish Array)   Dr.24234.1.S1_at (Zebrafish Array)   NM_199542_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000104167
NCBI entrez gene - 321452     See in Manteia.
RefSeq - NM_199542
RefSeq Peptide - NP_955836
swissprot - B8A5K9
ZFIN ID - ZDB-GENE-030131-105
Ensembl - ENSDARG00000017744
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMC2ENSGALG00000015691Gallus gallus
 SMC2ENSG00000136824Homo sapiens
 Smc2ENSMUSG00000028312Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR010935  SMCs flexible hinge
 IPR024704  Structural maintenance of chromosomes protein
 IPR027120  Smc2, ATP-binding cassette domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051276 chromosome organization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Condensation of Prophase Chromosomes
Condensation of Prometaphase Chromosomes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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