ENSDARG00000017762


Danio rerio

Features
Gene ID: ENSDARG00000017762
  
Biological name :srrt
  
Synonyms : Q66I22 / serrate RNA effector molecule homolog (Arabidopsis) / srrt
  
Possible biological names infered from orthology : Q99MR6 / Q9BXP5 / serrate, RNA effector molecule / Serrate RNA effector molecule homolog
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 4253929
Gene end: 4297459
  
Corresponding Affymetrix probe sets: Dr.4841.1.S1_at (Zebrafish Array)   NM_173238_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005886
NCBI entrez gene - 192311     See in Manteia.
RefSeq - NM_173238
RefSeq Peptide - NP_775345
swissprot - Q66I22
ZFIN ID - ZDB-GENE-020419-13
Ensembl - ENSDARG00000017762
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRRTENSG00000087087Homo sapiens
 SrrtENSMUSG00000037364Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007042  Arsenite-resistance protein 2
 IPR021933  Protein of unknown function DUF3546


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008283 cell proliferation ISS
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031053 primary miRNA processing ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0005737 cytoplasm ISS


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk necrotic , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton increased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014898 ncbp2 / Q8JGR6 / nuclear cap binding protein subunit 2 / Q9CQ49* / NCBP2L* / P52298* / A6PVI3* / nuclear cap binding protein subunit 2 like*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr