ENSG00000087087


Homo sapiens

Features
Gene ID: ENSG00000087087
  
Biological name :SRRT
  
Synonyms : Q9BXP5 / serrate, RNA effector molecule / SRRT
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.1
Gene start: 100875111
Gene end: 100888664
  
Corresponding Affymetrix probe sets: 201679_at (Human Genome U133 Plus 2.0 Array)   201680_x_at (Human Genome U133 Plus 2.0 Array)   214127_s_at (Human Genome U133 Plus 2.0 Array)   222046_at (Human Genome U133 Plus 2.0 Array)   222047_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000480421
Ensembl peptide - ENSP00000478341
Ensembl peptide - ENSP00000481173
Ensembl peptide - ENSP00000492916
Ensembl peptide - ENSP00000483556
Ensembl peptide - ENSP00000483348
Ensembl peptide - ENSP00000396807
Ensembl peptide - ENSP00000398618
Ensembl peptide - ENSP00000400703
Ensembl peptide - ENSP00000400912
Ensembl peptide - ENSP00000410588
NCBI entrez gene - 51593     See in Manteia.
OMIM - 614469
RefSeq - XM_017012291
RefSeq - NM_001128852
RefSeq - NM_001128853
RefSeq - NM_001128854
RefSeq - NM_015908
RefSeq - XM_005250405
RefSeq - XM_005250406
RefSeq - XM_005250407
RefSeq - XM_005250408
RefSeq - XM_017012290
RefSeq Peptide - NP_001122325
RefSeq Peptide - NP_001122326
RefSeq Peptide - NP_056992
RefSeq Peptide - NP_001122324
swissprot - H7C0U8
swissprot - H7C1K0
swissprot - H7C3A1
swissprot - A0A087X0F4
swissprot - Q9BXP5
swissprot - C9JUL9
swissprot - A0A286YEP7
swissprot - A0A0A0MSP6
Ensembl - ENSG00000087087
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srrtENSDARG00000017762Danio rerio
 SrrtENSMUSG00000037364Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007042  Arsenite-resistance protein 2
 IPR021933  Protein of unknown function DUF3546
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated ISS
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031053 primary miRNA processing IEA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0046685 response to arsenic-containing substance NAS
 biological_processGO:0050769 positive regulation of neurogenesis IEA
 biological_processGO:0097150 neuronal stem cell population maintenance IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136937 NCBP1 / Q09161 / nuclear cap binding protein subunit 1  / complex / reaction
 ENSG00000164902 PHAX / Q9H814 / phosphorylated adaptor for RNA export  / complex / reaction
 ENSG00000114503 NCBP2 / P52298 / nuclear cap binding protein subunit 2  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr