ENSDARG00000017844


Danio rerio

Features
Gene ID: ENSDARG00000017844
  
Biological name :copz1
  
Synonyms : coatomer protein complex, subunit zeta 1 / copz1
  
Possible biological names infered from orthology : Coatomer subunit zeta-1 / P61923 / P61924
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36340520
Gene end: 36354106
  
Corresponding Affymetrix probe sets: Dr.8161.1.S1_at (Zebrafish Array)   NM_131508_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000015008
NCBI entrez gene - 57970     See in Manteia.
RefSeq - NM_131508
RefSeq Peptide - NP_571583
swissprot - F1QFP1
ZFIN ID - ZDB-GENE-000406-6
Ensembl - ENSDARG00000017844
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COPZ1ENSGALG00000043336Gallus gallus
 COPZ1ENSG00000111481Homo sapiens
 Copz1ENSMUSG00000060992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
copz2 / coatomer protein complex, subunit zeta 2ENSDARG0000000678667


Protein motifs (from Interpro)
Interpro ID Name
 IPR000804  Clathrin adaptor complex, small chain
 IPR011012  Longin-like domain superfamily
 IPR022775  AP complex, mu/sigma subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002088 lens development in camera-type eye IMP
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000035 lens lens quality , abnormal
Show

 ZFA:0000107 eye eye quality , abnormal
eye degenerate , abnormal
eye decreased size , abnormal
eye decreased pigmentation , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium degenerate , abnormal
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 ZFA:0000282 sensory system sensory system quality , abnormal
Show

 ZFA:0001114 head head decreased width , abnormal
head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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